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BacWGSTdb, a database for genotyping and source tracking bacterial pathogens.
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scholarly article
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Europe PubMed Central
PMC publication ID
4702769
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26433226%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
title
BacWGSTdb, a database for genotyping and source tracking bacterial pathogens
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4702769
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26433226%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
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database
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author
Zhi Ruan
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4702769
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26433226%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
author name string
Ye Feng
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4702769
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26433226%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
language of work or name
English
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publication date
3 October 2015
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Europe PubMed Central
PMC publication ID
4702769
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26433226%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
published in
Nucleic Acids Research
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Europe PubMed Central
PMC publication ID
4702769
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26433226%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
volume
44
1 reference
stated in
Europe PubMed Central
PMC publication ID
4702769
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26433226%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
issue
D1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4702769
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26433226%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
page(s)
D682-7
1 reference
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Europe PubMed Central
PMC publication ID
4702769
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26433226%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
copyright license
Creative Commons Attribution-NonCommercial 4.0 International
start time
14 November 2016
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copyrighted
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Content discovery and retrieval services at the European Nucleotide Archive
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Using multilocus sequence typing to study bacterial variation: prospects in the genomic era.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Population dynamics of an Acinetobacter baumannii clonal complex during colonization of patients
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Genome-wide identification of Acinetobacter baumannii genes necessary for persistence in the lung
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
New insights into dissemination and variation of the health care-associated pathogen Acinetobacter baumannii from genomic analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
PATRIC, the bacterial bioinformatics database and analysis resource
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Rapid bacterial genome sequencing: methods and applications in clinical microbiology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Automated extraction of typing information for bacterial pathogens from whole genome sequence data: Neisseria meningitidis as an exemplar.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Overview of molecular typing methods for outbreak detection and epidemiological surveillance.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Pathogen typing in the genomics era: MLST and the future of molecular epidemiology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
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30 September 2017
Next-generation sequencing technologies and their impact on microbial genomics.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Transforming clinical microbiology with bacterial genome sequencing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Rapid whole-genome sequencing of bacterial pathogens in the clinical microbiology laboratory--pipe dream or reality?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
The Sequence Read Archive: explosive growth of sequencing data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Molecular epidemiology of carbapenem-nonsusceptible Acinetobacter baumannii in the United States.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
BIGSdb: Scalable analysis of bacterial genome variation at the population level.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
TreeVector: scalable, interactive, phylogenetic trees for the web
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
NCBI BLAST: a better web interface
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Multilocus sequence typing of bacteria
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
The multilocus sequence typing network: mlst.net
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Prospects for inferring very large phylogenies by using the neighbor-joining method
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Versatile and open software for comparing large genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
The neighbor-joining method: a new method for reconstructing phylogenetic trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
30 September 2017
Risk factors and outcome analysis of acinetobacter baumannii complex bacteremia in critical patients
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
28 June 2018
Wide distribution of CC92 carbapenem-resistant and OXA-23-producing Acinetobacter baumannii in multiple provinces of China.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
28 June 2018
MLST revisited: the gene-by-gene approach to bacterial genomics.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
21 September 2018
Clearcut: a fast implementation of relaxed neighbor joining.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
21 September 2018
GenBank
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702769
retrieved
21 October 2018
Identifiers
DOI
10.1093/NAR/GKV1004
1 reference
stated in
Europe PubMed Central
PMC publication ID
4702769
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26433226%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
DBLP publication ID
journals/nar/RuanF16
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMC publication ID
4702769
1 reference
stated in
Europe PubMed Central
PMC publication ID
4702769
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26433226%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
PubMed publication ID
26433226
1 reference
stated in
Europe PubMed Central
PMC publication ID
4702769
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26433226%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 February 2020
ResearchGate publication ID
282568850
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