(Q36510494)

14 August 2017

Geometry of mediating protein affects the probability of loop formation in DNA (English)

1 reference

14 August 2017

Neeraj J Agrawal

1

1 reference

14 August 2017

Ravi Radhakrishnan

series ordinal

2

1 reference

14 August 2017

Prashant K Purohit

series ordinal

3

1 reference

14 August 2017

language of work or name

English

0 references

publication date

11 January 2008

1 reference

14 August 2017

9

1 reference

inferred from page(s)

published in

Biophysical Journal

1 reference

14 August 2017

94

1 reference

14 August 2017

8

1 reference

14 August 2017

3150-3158

1 reference

Conformational entropy in molecular recognition by proteins

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Cyclization of short DNA fragments and bending fluctuations of the double helix

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Exact theory of kinkable elastic polymers.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Enzyme-mediated DNA looping

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Making contacts on a nucleic acid polymer

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Efficient, Multiple-Range Random Walk Algorithm to Calculate the Density of States

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

The role of rigidity in DNA looping-unlooping by AraC

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

A Brownian dynamics program for the simulation of linear and circular DNA and other wormlike chain polyelectrolytes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Crystal structure of lac repressor core tetramer and its implications for DNA looping

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

DNA looping by two-site restriction endonucleases: heterogeneous probability distributions for loop size and unbinding force

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Effect of supercoiling on formation of protein-mediated DNA loops.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Kinking occurs during molecular dynamics simulations of small DNA minicircles.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Protein-mediated DNA loops: effects of protein bridge size and kinks.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Apparent persistence length renormalization of bent DNA.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Spontaneous sharp bending of double-stranded DNA.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Relaxation of a single DNA molecule observed by optical microscopy.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275674

Designed hyperstable Lac repressor.DNA loop topologies suggest alternative loop geometries

21 September 2018

1 reference

12 December 2020

Conformational and thermodynamic properties of supercoiled DNA

1 reference

12 December 2020

1 reference

12 December 2020

Formation of loops in DNA under tension

1 reference

12 December 2020

Sequence-Dependent Effects in the Cyclization of Short DNA.

1 reference

12 December 2020

Measurement of lactose repressor-mediated loop formation and breakdown in single DNA molecules

1 reference

12 December 2020

10.1529/BIOPHYSJ.107.122986

Identifiers

DOI

1 reference

14 August 2017

1 reference

14 August 2017

PubMed publication ID

18192346

1 reference