(Q36538246)

English

Molecular dynamics simulations of asymmetric NaCl and KCl solutions separated by phosphatidylcholine bilayers: potential drops and structural changes induced by strong Na+-lipid interactions and finite size effects

scientific article published on 25 January 2008

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Molecular dynamics simulations of asymmetric NaCl and KCl solutions separated by phosphatidylcholine bilayers: potential drops and structural changes induced by strong Na+-lipid interactions and finite size effects (English)

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

phosphatidylcholine

1 reference

based on heuristic

inferred from title

3

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

author name string

Sun-Joo Lee

1

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Yuhua Song

2

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

language of work or name

0 references

publication date

25 January 2008

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Biophysical Journal

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Europe PubMed Central

PMC publication ID

14 August 2017

94

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

9

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

3565-3576

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Rigidification of neutral lipid bilayers in the presence of salts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Ion leakage through transient water pores in protein-free lipid membranes driven by transmembrane ionic charge imbalance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Ion permeation through a narrow channel: using gramicidin to ascertain all-atom molecular dynamics potential of mean force methodology and biomolecular force fields

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Molecular dynamics simulations of salicylate effects on the micro- and mesoscopic properties of a dipalmitoylphosphatidylcholine bilayer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

GROMACS: fast, flexible, and free

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Effect of ion-binding and chemical phospholipid structure on the nanomechanics of lipid bilayers studied by force spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Changes in phosphatidylcholine headgroup tilt and water order induced by monovalent salts: molecular dynamics simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Molecular dynamics simulation of a palmitoyl-oleoyl phosphatidylserine bilayer with Na+ counterions and NaCl.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Force fields for protein simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Effect of sodium chloride on a lipid bilayer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Molecular dynamics simulation of a dipalmitoylphosphatidylcholine bilayer with NaCl

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Setting up and optimization of membrane protein simulations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Structure of lipid bilayers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Canonical dynamics: Equilibrium phase-space distributions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Incorporation of surface tension into molecular dynamics simulation of an interface: a fluid phase lipid bilayer membrane

1 reference

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30 September 2017

Internal electrostatic potentials in bilayers: measuring and controlling dipole potentials in lipid vesicles

1 reference

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30 September 2017

Ca2+ binding to phosphatidylcholine bilayers as studied by deuterium magnetic resonance. Evidence for the formation of a Ca2+ complex with two phospholipid molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

The dynamic structure of fatty acyl chains in a phospholipid bilayer measured by deuterium magnetic resonance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

30 September 2017

Ion transport across transmembrane pores

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

28 June 2018

Molecular dynamics - potential of mean force calculations as a tool for understanding ion permeation and selectivity in narrow channels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

28 June 2018

A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

28 June 2018

Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

28 June 2018

Valence selectivity of the gramicidin channel: a molecular dynamics free energy perturbation study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

28 June 2018

Measurement of surface potential and surface charge densities of sarcoplasmic reticulum membranes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

28 June 2018

Structure of fully hydrated bilayer dispersions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

28 June 2018

Diffuse-double layer at a membrane-aqueous interface measured with x-ray standing waves

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

28 June 2018

High-sensitivity scanning calorimetric study of mixtures of cholesterol with dimyristoyl- and dipalmitoylphosphatidylcholines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

28 June 2018

On the orientation of a designed transmembrane peptide: toward the right tilt angle?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

21 September 2018

Nanopore-facilitated, voltage-driven phosphatidylserine translocation in lipid bilayers--in cells and in silico

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

21 September 2018

Asymmetry of lipid bilayers induced by monovalent salt: atomistic molecular-dynamics study.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2292386

21 September 2018

Atomistic simulations of biologically realistic transmembrane potential gradients.

1 reference

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Ion solvation thermodynamics from simulation with a polarizable force field

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Interaction of Zn2+ with phospholipid membranes.

1 reference

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21 September 2018

The determination of binding site density and association constants for monovalent cation adsorption onto liposomes made from mixtures of zwitterionic and charged lipids

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Surface dielectric constant, surface hydrophobicity and membrane fusion

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1 reference

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/18222999

12 December 2020

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inferred from PubMed ID database lookup

Molecular dynamics simulation of the spontaneous formation of a small DPPC vesicle in water in atomistic detail

1 reference

https://pubmed.ncbi.nlm.nih.gov/18222999

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based on heuristic

inferred from PubMed ID database lookup

Test of molecular dynamics force fields in gramicidin A

1 reference

https://pubmed.ncbi.nlm.nih.gov/18222999

12 December 2020

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inferred from PubMed ID database lookup

Model of an asymmetric DPPC/DPPS membrane: effect of asymmetry on the lipid properties. A molecular dynamics simulation study

1 reference

https://pubmed.ncbi.nlm.nih.gov/18222999

12 December 2020

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inferred from PubMed ID database lookup

A molecular dynamics investigation of the influence of hydration and temperature on structural and dynamical properties of a dimyristoylphosphatidylcholine bilayer

1 reference

https://pubmed.ncbi.nlm.nih.gov/18222999

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamics in atomistic simulations of phospholipid membranes: Nuclear magnetic resonance relaxation rates and lateral diffusion

1 reference

https://pubmed.ncbi.nlm.nih.gov/18222999

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Convergence of molecular dynamics simulations of membrane proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/18222999

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Direct imaging of lipid-ion network formation under physiological conditions by frequency modulation atomic force microscopy

1 reference

https://pubmed.ncbi.nlm.nih.gov/18222999

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Lipid Transmembrane Asymmetry and Intrinsic Membrane Potential: Two Sides of the Same Coin

1 reference

https://pubmed.ncbi.nlm.nih.gov/18222999

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based on heuristic

inferred from PubMed ID database lookup

Quantitative characterization of ion pairing and cluster formation in strong 1:1 electrolytes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18222999

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polarizable Force Fields: History, Test Cases, and Prospects

1 reference

https://pubmed.ncbi.nlm.nih.gov/18222999

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of calcium ion on the mechanical properties of lipid bilayer membrane

1 reference

https://pubmed.ncbi.nlm.nih.gov/18222999

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1529/BIOPHYSJ.107.116335

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

release_hojw7h6hn5bfjirhbkl5h5ohtm

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https://api.fatcat.wiki/v0/release/hojw7h6hn5bfjirhbkl5h5ohtm

24 November 2022

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mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

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