(Q36553183)

English

Single-molecule fluorescence resonance energy transfer shows uniformity in TATA binding protein-induced DNA bending and heterogeneity in bending kinetics

scientific article published on 11 September 2012

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scholarly article

1 reference

Europe PubMed Central

14 August 2017

Single-molecule fluorescence resonance energy transfer shows uniformity in TATA binding protein-induced DNA bending and heterogeneity in bending kinetics (English)

1 reference

Europe PubMed Central

14 August 2017

author name string

Rebecca H Blair

1

1 reference

Europe PubMed Central

14 August 2017

James A Goodrich

2

1 reference

Europe PubMed Central

14 August 2017

Jennifer F Kugel

3

1 reference

Europe PubMed Central

14 August 2017

language of work or name

0 references

publication date

11 September 2012

1 reference

Europe PubMed Central

14 August 2017

1 reference

Europe PubMed Central

14 August 2017

51

1 reference

Europe PubMed Central

14 August 2017

38

1 reference

Europe PubMed Central

14 August 2017

7444-7455

1 reference

Europe PubMed Central

14 August 2017

Biological mechanisms, one molecule at a time

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Application of single-molecule spectroscopy in studying enzyme kinetics and mechanism.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Advances in single-molecule fluorescence methods for molecular biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

The general transcription machinery and general cofactors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Stepwise bending of DNA by a single TATA-box binding protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Control of gene expression through regulation of the TATA-binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Signals for TBP/TATA box recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

TATA element recognition by the TATA box-binding protein has been conserved throughout evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Bidirectional binding of the TATA box binding protein to the TATA box

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Dynamic interplay of TFIIA, TBP and TATA DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Simultaneous binding and bending of promoter DNA by the TATA binding protein: real time kinetic measurements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Crystal structure of a human TATA box-binding protein/TATA element complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Crystal structure of a yeast TFIIA/TBP/DNA complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Co-crystal structure of TBP recognizing the minor groove of a TATA element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Crystal structure of a yeast TBP/TATA-box complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Transcription factor (TF) IIB and TFIIA can independently increase the affinity of the TATA-binding protein for DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Reconstitution of human TFIIA activity from recombinant polypeptides: a role in TFIID-mediated transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Molecular cloning of the small (gamma) subunit of human TFIIA reveals functions critical for activated transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Interaction of TFIID in the minor groove of the TATA element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

TFIID binds in the minor groove of the TATA box

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

30 September 2017

Tracking transcription factor complexes on DNA using total internal reflectance fluorescence protein binding microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

28 June 2018

Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

28 June 2018

TATA-binding protein recognition and bending of a consensus promoter are protein species dependent.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

21 September 2018

Native human TATA-binding protein simultaneously binds and bends promoter DNA without a slow isomerization step or TFIIB requirement.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

21 September 2018

Affinity, stability and polarity of binding of the TATA binding protein governed by flexure at the TATA Box.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3551999

21 September 2018

DNA bending is an important component of site-specific recognition by the TATA binding protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/22934924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of the yeast TFIIA/TBP/DNA complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/22934924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contributions of the TATA box sequence to rate-limiting steps in transcription initiation by RNA polymerase II

1 reference

https://pubmed.ncbi.nlm.nih.gov/22934924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA sequence-specific recognition by the Saccharomyces cerevisiae "TATA" binding protein: promoter-dependent differences in the thermodynamics and kinetics of binding

1 reference

https://pubmed.ncbi.nlm.nih.gov/22934924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Intermediate species possessing bent DNA are present along the pathway to formation of a final TBP-TATA complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/22934924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The sequence at specific positions in the early transcribed region sets the rate of transcript synthesis by RNA polymerase II in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/22934924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TFIIA Changes the Conformation of the DNA in TBP/TATA Complexes and Increases their Kinetic Stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/22934924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA bends in TATA-binding protein-TATA complexes in solution are DNA sequence-dependent

1 reference

https://pubmed.ncbi.nlm.nih.gov/22934924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA sequence-dependent differences in TATA-binding protein-induced DNA bending in solution are highly sensitive to osmolytes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22934924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A regulated two-step mechanism of TBP binding to DNA: a solvent-exposed surface of TBP inhibits TATA box recognition

1 reference

https://pubmed.ncbi.nlm.nih.gov/22934924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/BI300491J

1 reference

Europe PubMed Central

14 August 2017

1 reference

Europe PubMed Central

14 August 2017

1 reference

Europe PubMed Central

14 August 2017

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