(Q36629543)

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Subpathway-GMir: identifying miRNA-mediated metabolic subpathways by integrating condition-specific genes, microRNAs, and pathway topologies

scientific article published on 12 October 2015

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scholarly article

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Europe PubMed Central

PMC publication ID

15 August 2017

Subpathway-GMir: identifying miRNA-mediated metabolic subpathways by integrating condition-specific genes, microRNAs, and pathway topologies (English)

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

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inferred from title

author name string

Li Feng

1

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Europe PubMed Central

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15 August 2017

Yanjun Xu

2

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15 August 2017

Yunpeng Zhang

3

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15 August 2017

Zeguo Sun

4

1 reference

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15 August 2017

Junwei Han

5

1 reference

Europe PubMed Central

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15 August 2017

Chunlong Zhang

6

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15 August 2017

Haixiu Yang

7

1 reference

Europe PubMed Central

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15 August 2017

Desi Shang

8

1 reference

Europe PubMed Central

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15 August 2017

Fei Su

9

1 reference

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15 August 2017

Xinrui Shi

10

1 reference

Europe PubMed Central

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15 August 2017

Shang Li

11

1 reference

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15 August 2017

Chunquan Li

12

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15 August 2017

Xia Li

13

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15 August 2017

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publication date

12 October 2015

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Europe PubMed Central

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15 August 2017

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Europe PubMed Central

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15 August 2017

6

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Europe PubMed Central

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15 August 2017

36

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

39151-39164

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

PKM2 promotes glucose metabolism and cell growth in gliomas through a mechanism involving a let-7a/c-Myc/hnRNPA1 feedback loop

1 reference

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Pathway analysis from lists of microRNAs: common pitfalls and alternative strategy

1 reference

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1 reference

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1 reference

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Phosphofructokinase: a mediator of glycolytic flux in cancer progression

1 reference

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Identification of miRNA-mediated core gene module for glioma patient prediction by integrating high-throughput miRNA, mRNA expression and pathway structure

1 reference

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Wiring miRNAs to pathways: a topological approach to integrate miRNA and mRNA expression profiles

1 reference

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Association between Related Purine Metabolites and Diabetic Retinopathy in Type 2 Diabetic Patients

1 reference

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Overexpression of CTHRC1 in hepatocellular carcinoma promotes tumor invasion and predicts poor prognosis

1 reference

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Subpathway-GM: identification of metabolic subpathways via joint power of interesting genes and metabolites and their topologies within pathways.

1 reference

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1 reference

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Roles of microRNA on cancer cell metabolism

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NT5E CpG island methylation is a favourable breast cancer biomarker

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MicroRNA-214 downregulation contributes to tumor angiogenesis by inducing secretion of the hepatoma-derived growth factor in human hepatoma

1 reference

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MicroRNAs in metabolism and metabolic disorders

1 reference

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Ten years of pathway analysis: current approaches and outstanding challenges

1 reference

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miRNA profiling in colorectal cancer highlights miR-1 involvement in MET-dependent proliferation.

1 reference

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MicroRNA-1 is a candidate tumor suppressor and prognostic marker in human prostate cancer.

1 reference

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TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support

1 reference

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Tumour suppressors miR-1 and miR-133a target the oncogenic function of purine nucleoside phosphorylase (PNP) in prostate cancer

1 reference

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The functional significance of miR-1 and miR-133a in renal cell carcinoma

1 reference

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Identification of novel molecular targets regulated by tumor suppressive miR-1/miR-133a in maxillary sinus squamous cell carcinoma

1 reference

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Glycerophospholipid synthesis as a novel drug target against cancer.

1 reference

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miRTarBase: a database curates experimentally validated microRNA-target interactions

1 reference

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miRBase: integrating microRNA annotation and deep-sequencing data

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The inhibitory effect of celecoxib on mouse hepatoma H22 cell line on the arachidonic acid metabolic pathway

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Distinct roles for miR-1 and miR-133a in the proliferation and differentiation of rhabdomyosarcoma cells

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miR-221&222 regulate TRAIL resistance and enhance tumorigenicity through PTEN and TIMP3 downregulation

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Arachidonic acid-induced apoptosis in rat hepatoma AS-30D cells is mediated by reactive oxygen species.

1 reference

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770763

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1 reference

https://pubmed.ncbi.nlm.nih.gov/26472186

12 December 2020

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inferred from PubMed ID database lookup

Cyclooxygenase-2 inhibitors in tumorigenesis (Part II)

1 reference

https://pubmed.ncbi.nlm.nih.gov/26472186

12 December 2020

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inferred from PubMed ID database lookup

Enzyme analysis of lymphoproliferative diseases: a useful addition to cell surface phenotyping

1 reference

https://pubmed.ncbi.nlm.nih.gov/26472186

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inferred from PubMed ID database lookup

Cyclooxygenase-2 inhibitors in tumorigenesis (part I)

1 reference

https://pubmed.ncbi.nlm.nih.gov/26472186

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MicroRNA regulation of cancer metabolism: role in tumour suppression

1 reference

https://pubmed.ncbi.nlm.nih.gov/26472186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.18632/ONCOTARGET.5341

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

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