(Q36635444)

15 August 2017

Alignment-free sequence comparison based on next-generation sequencing reads (English)

1 reference

15 August 2017

1 reference

Kai Song

1

1 reference

15 August 2017

Jie Ren

2

1 reference

15 August 2017

Zhiyuan Zhai

3

1 reference

15 August 2017

Xuemei Liu

4

1 reference

15 August 2017

Minghua Deng

5

1 reference

15 August 2017

Fengzhu Sun

6

1 reference

15 August 2017

1 February 2013

1 reference

Journal of Computational Biology

15 August 2017

1 reference

15 August 2017

20

1 reference

15 August 2017

2

1 reference

15 August 2017

64-79

1 reference

New powerful statistics for alignment-free sequence comparison under a pattern transfer model

15 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

Alignment-free detection of local similarity among viral and bacterial genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

Modeling non-uniformity in short-read rates in RNA-Seq data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

The power of detecting enriched patterns: an HMM approach

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

Biases in Illumina transcriptome sequencing caused by random hexamer priming

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

Assembly free comparative genomics of short-read sequence data discovers the needles in the haystack.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

Alignment-free sequence comparison (I): statistics and power

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

Identifying cis-regulatory sequences by word profile similarity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

MetaSim: a sequencing simulator for genomics and metagenomics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

Modeling ChIP sequencing in silico with applications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

28-way vertebrate alignment and conservation track in the UCSC Genome Browser

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

Alignment-free sequence comparison-a review

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

Distributional regimes for the number of k-word matches between two random sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

A measure of the similarity of sets of sequences not requiring sequence alignment

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

Alignment-free sequence comparison (II): theoretical power of comparison statistics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3581251

28 June 2018

Identifiers

DOI

10.1089/CMB.2012.0228

1 reference

15 August 2017

journals/jcb/SongRZLDS13

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

15 August 2017

PubMed publication ID

23383994

1 reference