(Q36676498)

15 August 2017

TFIIB aptamers inhibit transcription by perturbing PIC formation at distinct stages (English)

1 reference

15 August 2017

Aarti Sevilimedu

1

1 reference

15 August 2017

Hua Shi

series ordinal

2

1 reference

15 August 2017

John T Lis

series ordinal

3

1 reference

15 August 2017

language of work or name

English

0 references

publication date

10 April 2008

1 reference

15 August 2017

Nucleic Acids Research

1 reference

15 August 2017

36

1 reference

15 August 2017

9

1 reference

15 August 2017

3118-3127

1 reference

describes a project that uses

15 August 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2396426/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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TFIIB and the regulation of transcription by RNA polymerase II.

30 September 2017

1 reference

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30 September 2017

1 reference

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RNA aptamers directed to discrete functional sites on a single protein structural domain.

30 September 2017

1 reference

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Gene therapy progress and prospects: RNA aptamers

30 September 2017

1 reference

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An RNA aptamer that interferes with the DNA binding of the HSF transcription activator.

30 September 2017

1 reference

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The general transcription machinery and general cofactors

30 September 2017

1 reference

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Aptamers Selected for Higher-Affinity Binding Are Not More Specific for the Target Ligand

30 September 2017

1 reference

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Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots

30 September 2017

1 reference

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Intramers and aptamers: applications in protein-function analyses and potential for drug screening

30 September 2017

1 reference

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B2 RNA binds directly to RNA polymerase II to repress transcript synthesis

30 September 2017

1 reference

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Expressing RNA aptamers inside cells to reveal proteome and ribonome function

30 September 2017

1 reference

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Structure and mechanism of the RNA polymerase II transcription machinery

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

Probing TBP interactions in transcription initiation and reinitiation with RNA aptamers that act in distinct modes.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

Informational complexity and functional activity of RNA structures

30 September 2017

1 reference

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Intramers as promising new tools in functional proteomics

30 September 2017

1 reference

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Developing aptamers into therapeutics

30 September 2017

1 reference

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Mutational analysis of yeast TFIIB. A functional relationship between Ssu72 and Sub1/Tsp1 defined by allele-specific interactions with TFIIB.

30 September 2017

1 reference

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RNA aptamers as effective protein antagonists in a multicellular organism

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

Mutational analysis of the D1/E1 core helices and the conserved N-terminal region of yeast transcription factor IIB (TFIIB): identification of an N-terminal mutant that stabilizes TATA-binding protein-TFIIB-DNA complexes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

A specific RNA hairpin loop structure binds the RNA recognition motifs of the Drosophila SR protein B52

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

Oligonucleotides as research, diagnostic, and therapeutic agents

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

Protease footprinting reveals a surface on transcription factor TFIIB that serves as an interface for activators and coactivators

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

Diversity of oligonucleotide functions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

Five intermediate complexes in transcription initiation by RNA polymerase II

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

In vitro selection of RNA molecules that bind specific ligands

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

The N-terminal region of yeast TFIIB contains two adjacent functional domains involved in stable RNA polymerase II binding and transcription start site selection

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

Protease footprinting analysis of ternary complex formation by human TFIIA.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

The yeast SUA7 gene encodes a homolog of human transcription factor TFIIB and is required for normal start site selection in vivo.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

Molecular shapes of transcription factors TFIIB and VP16 in solution: implications for recognition

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

Activator-induced conformational change in general transcription factor TFIIB.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2396426

Interaction between an acidic activator and transcription factor TFIIB is required for transcriptional activation

5 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18403417

12 December 2020

inferred from PubMed ID database lookup

[Aptamer therapeutics]

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18403417

12 December 2020

inferred from PubMed ID database lookup

A transcription reinitiation intermediate that is stabilized by activator

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18403417

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKN163

1 reference

15 August 2017

1 reference

15 August 2017

PubMed publication ID

18403417

1 reference