(Q36689100)

15 August 2017

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title

Genome annotating proteomics pipelines: available tools (English)

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15 August 2017

Ian Shadforth

1

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15 August 2017

Conrad Bessant

series ordinal

2

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15 August 2017

publication date

1 December 2006

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Expert Review of Proteomics

15 August 2017

published in

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15 August 2017

volume

3

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15 August 2017

issue

6

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15 August 2017

page(s)

621-629

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Protein and peptide identification algorithms using MS for use in high-throughput, automated pipelines

15 August 2017

cites work

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https://api.crossref.org/works/10.1586%2F14789450.3.6.621

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

21 January 2018

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Software for computational peptide identification from MS-MS data

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Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries

21 January 2018

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Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 January 2018

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21 January 2018

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A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores

21 January 2018

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21 January 2018

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Proteogenomic mapping as a complementary method to perform genome annotation

21 January 2018

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Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

21 January 2018

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Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry

21 January 2018

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 January 2018

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21 January 2018

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Error tolerant searching of uninterpreted tandem mass spectrometry data

21 January 2018

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Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

21 January 2018

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21 January 2018

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Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics.

21 January 2018

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Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 January 2018

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Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

21 January 2018

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The use of proteotypic peptide libraries for protein identification

21 January 2018

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Using annotated peptide mass spectrum libraries for protein identification

21 January 2018

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Open source system for analyzing, validating, and storing protein identification data

21 January 2018

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21 January 2018

Identifiers

DOI

10.1586/14789450.3.6.621

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15 August 2017

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