(Q36785247)

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Interaction of anesthetics with open and closed conformations of a potassium channel studied via molecular dynamics and normal mode analysis

scientific article published on 29 February 2008

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18310250%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

Interaction of anesthetics with open and closed conformations of a potassium channel studied via molecular dynamics and normal mode analysis (English)

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18310250%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18310250%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

author name string

Satyavani Vemparala

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18310250%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

Michael L Klein

3

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3 January 2020

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29 February 2008

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3 January 2020

Biophysical Journal

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18310250%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

94

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3 January 2020

11

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3 January 2020

4260-4269

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18310250%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

Dynamics of firefly luciferase inhibition by general anesthetics: Gaussian and anisotropic network analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Partitioning of anesthetics into a lipid bilayer and their interaction with membrane-bound peptide bundles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Common mechanism of pore opening shared by five different potassium channels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Role of aromatic localization in the gating process of a potassium channel.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Anesthetic interaction with ketosteroid isomerase: insights from molecular dynamics simulations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes

1 reference

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29 September 2017

A gating mechanism proposed from a simulation of a human alpha7 nicotinic acetylcholine receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Concentration effects of volatile anesthetics on the properties of model membranes: a coarse-grain approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Promiscuous ligands and attractive cavities: how do the inhaled anesthetics work?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Mechanisms of actions of inhaled anesthetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Crystal structure of the potassium channel KirBac1.1 in the closed state

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Large-scale molecular dynamics simulations of general anesthetic effects on the ion channel in the fully hydrated membrane: the implication of molecular mechanisms of general anesthesia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

The effects of general anaesthetics on ligand-gated ion channels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

The nature of sites of general anaesthetic action

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Functional motions of influenza virus hemagglutinin: a structure-based analytical approach

1 reference

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29 September 2017

Tandem pore domain K channels: an important site of volatile anesthetic action?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Anesthetics and ion channels: molecular models and sites of action

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Ion selectivity filter regulates local anesthetic inhibition of G-protein-gated inwardly rectifying K+ channels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Anisotropy of fluctuation dynamics of proteins with an elastic network model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Distribution of halothane in a dipalmitoylphosphatidylcholine bilayer from molecular dynamics calculations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Effects of anesthetics on the structure of a phospholipid bilayer: molecular dynamics investigation of halothane in the hydrated liquid crystal phase of dipalmitoylphosphatidylcholine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Irreversible phase transition of firefly luciferase: contrasting effects of volatile anesthetics and myristic acid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Sites of alcohol and volatile anaesthetic action on GABA(A) and glycine receptors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Different distribution of fluorinated anesthetics and nonanesthetics in model membrane: a 19F NMR study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Specificity of ligand binding in a buried nonpolar cavity of T4 lysozyme: linkage of dynamics and structural plasticity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Triplet state properties of tryptophan residues in complexes of mutated Escherichia coli single-stranded DNA binding proteins with single-stranded polynucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

29 September 2017

Two different conformational states of the KirBac3.1 potassium channel revealed by electron crystallography.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

27 June 2018

Modeling of an ion channel in its open conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

27 June 2018

Simplified normal mode analysis of conformational transitions in DNA-dependent polymerases: the elastic network model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

27 June 2018

Conformational change of proteins arising from normal mode calculations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

27 June 2018

Molecular dynamics simulation of four-alpha-helix bundles that bind the anesthetic halothane.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

27 June 2018

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

27 June 2018

Conformational dynamics of M2 helices in KirBac channels: helix flexibility in relation to gating via molecular dynamics simulations.

1 reference

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5 September 2018

On the potential of normal-mode analysis for solving difficult molecular-replacement problems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

5 September 2018

Selective action of anesthetics on synapses and axons in mammalian sympathetic ganglia.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

5 September 2018

Identification of Nicotinic Acetylcholine Receptor Amino Acids Photolabeled by the Volatile Anesthetic Halothane

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

5 September 2018

Molecular dynamics simulation of a synthetic four-alpha-helix bundle that binds the anesthetic halothane.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

5 September 2018

Bound volatile general anesthetics alter both local protein dynamics and global protein stability.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

5 September 2018

A discrete site for general anesthetics on a postsynaptic receptor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

5 September 2018

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2480689

4 December 2018

Cooperative fluctuations of unliganded and substrate-bound HIV-1 protease: a structure-based analysis on a variety of conformations from crystallography and molecular dynamics simulations

1 reference

https://pubmed.ncbi.nlm.nih.gov/18310250

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/18310250

12 December 2020

based on heuristic

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Identifiers

10.1529/BIOPHYSJ.107.119958

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Europe PubMed Central

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3 January 2020

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Europe PubMed Central

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3 January 2020

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Europe PubMed Central

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3 January 2020

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