(Q36793961)

English

Quantifying the contribution of chromatin dynamics to stochastic gene expression reveals long, locus-dependent periods between transcriptional bursts

scientific article published on 25 February 2013

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scholarly article

1 reference

Europe PubMed Central

16 August 2017

Quantifying the contribution of chromatin dynamics to stochastic gene expression reveals long, locus-dependent periods between transcriptional bursts (English)

1 reference

Europe PubMed Central

16 August 2017

author name string

José Viñuelas

1

1 reference

Europe PubMed Central

16 August 2017

Gaël Kaneko

2

1 reference

Europe PubMed Central

16 August 2017

Antoine Coulon

3

1 reference

Europe PubMed Central

16 August 2017

Elodie Vallin

4

1 reference

Europe PubMed Central

16 August 2017

Valérie Morin

5

1 reference

Europe PubMed Central

16 August 2017

Camila Mejia-Pous

6

1 reference

Europe PubMed Central

16 August 2017

Jean-Jacques Kupiec

7

1 reference

Europe PubMed Central

16 August 2017

Guillaume Beslon

8

1 reference

Europe PubMed Central

16 August 2017

Olivier Gandrillon

9

1 reference

Europe PubMed Central

16 August 2017

publication date

25 February 2013

1 reference

Europe PubMed Central

16 August 2017

1 reference

Europe PubMed Central

16 August 2017

11

1 reference

Europe PubMed Central

16 August 2017

15

1 reference

Europe PubMed Central

16 August 2017

https://scigraph.springernature.com/pub.10.1186/1741-7007-11-15

0 references

Transcriptional burst frequency and burst size are equally modulated across the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Dynamics of protein noise can distinguish between alternate sources of gene-expression variability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Towards experimental manipulation of stochasticity in gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Using gene expression noise to understand gene regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Random partitioning of molecules at cell division

1 reference

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29 September 2017

Varying virulence: epigenetic control of expression noise and disease processes

1 reference

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29 September 2017

Global quantification of mammalian gene expression control

1 reference

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29 September 2017

Chromosomal position effects are linked to sir2-mediated variation in transcriptional burst size

1 reference

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29 September 2017

Dynamic analysis of stochastic transcription cycles

1 reference

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29 September 2017

General properties of transcriptional time series in Escherichia coli

1 reference

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29 September 2017

Mammalian genes are transcribed with widely different bursting kinetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Non-genetic heterogeneity from stochastic partitioning at cell division

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

HIV promoter integration site primarily modulates transcriptional burst size rather than frequency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Functional roles for noise in genetic circuits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

1 reference

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29 September 2017

Bursts and pulses: insights from single cell studies into transcriptional mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Spatial epigenetic control of mono- and bistable gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Regional regulation of transcription in the chicken genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Listening to the noise: random fluctuations reveal gene network parameters.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

BioNumbers--the database of key numbers in molecular and cell biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Non-genetic cell-to-cell variability and the consequences for pharmacology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

A single molecule view of gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

A combination of transposable elements and magnetic cell sorting provides a very efficient transgenesis system for chicken primary erythroid progenitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Stochastic gene expression as a molecular switch for viral latency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

A high-throughput splinkerette-PCR method for the isolation and sequencing of retroviral insertion sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Elongation dynamics shape bursty transcription and translation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Combinatorial probabilistic chromatin interactions produce transcriptional heterogeneity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Single-RNA counting reveals alternative modes of gene expression in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

iMapper: a web application for the automated analysis and mapping of insertional mutagenesis sequence data against Ensembl genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Nature, nurture, or chance: stochastic gene expression and its consequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Frequency-modulated nuclear localization bursts coordinate gene regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Transcriptome-wide noise controls lineage choice in mammalian progenitor cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Bet-hedging and epigenetic inheritance in bacterial cell development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Domain-wide regulation of gene expression in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

In vivo dynamics of RNA polymerase II transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Tunability and noise dependence in differentiation dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Phenotypic consequences of promoter-mediated transcriptional noise

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Stochastic mRNA synthesis in mammalian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Noise in protein expression scales with natural protein abundance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Transcriptional pulsing of a developmental gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

A fluctuation method to quantify in vivo fluorescence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

ENZYME INDUCTION AS AN ALL-OR-NONE PHENOMENON

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Real-time kinetics of gene activity in individual bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Contributions of low molecule number and chromosomal positioning to stochastic gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Trichostatin A-induced histone acetylation causes decondensation of interphase chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Control of stochasticity in eukaryotic gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Region-specific chromatin decondensation and micronucleus formation induced by 5-azacytidine in human TIG-7 cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Transposition of the Tol2 element, an Ac-like element from the Japanese medaka fish Oryzias latipes, in mouse embryonic stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Noise in eukaryotic gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Control, exploitation and tolerance of intracellular noise

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Stochastic gene expression in a single cell

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Regulation of noise in the expression of a single gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

The human transcriptome map: clustering of highly expressed genes in chromosomal domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Experimental condensation inhibition in constitutive and facultative heterochromatin of mammalian chromosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Position effects are influenced by the orientation of a transgene with respect to flanking chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Loss of transcriptional activity of a transgene is accompanied by DNA methylation and histone deacetylation and is prevented by insulators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Trichostatin A and trapoxin: novel chemical probes for the role of histone acetylation in chromatin structure and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Splinkerettes--improved vectorettes for greater efficiency in PCR walking.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Mode of action and effects of 5-azacytidine and of its derivatives in eukaryotic cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Chicken hematopoietic cells transformed by seven strains of defective avian leukemia viruses display three distinct phenotypes of differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

29 September 2017

Transcriptional bursting from the HIV-1 promoter is a significant source of stochastic noise in HIV-1 gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

27 June 2018

Large clusters of co-expressed genes in the Drosophila genome.

1 reference

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27 June 2018

Erythroblast cell lines transformed by a temperature-sensitive mutant of avian erythroblastosis virus: a model system to study erythroid differentiation in vitro.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

27 June 2018

Non-genetic individuality: chance in the single cell

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27 June 2018

Architecture-dependent noise discriminates functionally analogous differentiation circuits.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

5 September 2018

Not all quiet on the noise front

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635915

5 September 2018

Synchronous and stochastic patterns of gene activation in the Drosophila embryo

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5 September 2018

Effects of molecular memory and bursting on fluctuations in gene expression.

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5 September 2018

Evolution of chromosome organization driven by selection for reduced gene expression noise

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5 September 2018

Effect of feedback regulation on stochastic gene expression.

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5 September 2018

Diffusion of transcription factors can drastically enhance the noise in gene expression

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5 September 2018

Inhibitors of DNA methylation and histone deacetylation activate cytomegalovirus promoter-controlled reporter gene expression in human glioblastoma cell line U87.

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5 September 2018

Single-Cell Observations Reveal Intermediate Transcriptional Silencing States

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21 January 2018

Single-allele analysis of transcription kinetics in living mammalian cells

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single-cell gene expression profiling

1 reference

https://pubmed.ncbi.nlm.nih.gov/23442824

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microbiology. Necessary noise

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https://pubmed.ncbi.nlm.nih.gov/23442824

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prime movers of noisy gene expression

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https://pubmed.ncbi.nlm.nih.gov/23442824

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1741-7007-11-15

1 reference

Europe PubMed Central

16 August 2017

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1 reference

Europe PubMed Central

16 August 2017

1 reference

Europe PubMed Central

16 August 2017

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