(Q36836278)

16 August 2017

Ancient, recurrent phage attacks and recombination shaped dynamic sequence-variable mosaics at the root of phytoplasma genome evolution (English)

1 reference

16 August 2017

Wei Wei

1

1 reference

16 August 2017

Robert E Davis

series ordinal

2

1 reference

16 August 2017

Rasa Jomantiene

series ordinal

3

1 reference

16 August 2017

Yan Zhao

series ordinal

4

1 reference

16 August 2017

language of work or name

English

0 references

publication date

13 August 2008

1 reference

Proceedings of the National Academy of Sciences of the United States of America

16 August 2017

1 reference

16 August 2017

105

1 reference

16 August 2017

33

1 reference

16 August 2017

11827-11832

1 reference

Comparative genome analysis of "Candidatus Phytoplasma australiense" (subgroup tuf-Australia I; rp-A) and "Ca. Phytoplasma asteris" Strains OY-M and AY-WB

16 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Identification of prophages in bacterial genomes by dinucleotide relative abundance difference

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Computer-simulated RFLP analysis of 16S rRNA genes: identification of ten new phytoplasma groups

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Phage_Finder: automated identification and classification of prophage regions in complete bacterial genome sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Stolbur phytoplasma genome survey achieved using a suppression subtractive hybridization approach with high specificity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Stability of large segmental duplications in the yeast genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Clusters of diverse genes existing as multiple, sequence-variable mosaics in a phytoplasma genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Mobile DNA in obligate intracellular bacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

The generalized transducing Salmonella bacteriophage ES18: complete genome sequence and DNA packaging strategy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Compilation and analysis of group II intron insertions in bacterial genomes: evidence for retroelement behavior

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Phage genomics: small is beautiful

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

The origins and ongoing evolution of viruses

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Phytoplasma: phytopathogenic mollicutes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Virioplankton: Viruses in Aquatic Ecosystems

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Global dinucleotide signatures and analysis of genomic heterogeneity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Compositional differences within and between eukaryotic genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

The Minimal Gene Complement of Mycoplasma genitalium

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Dinucleotide relative abundance extremes: a genomic signature

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Over- and under-representation of short oligonucleotides in DNA sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Viral integration and excision: structure of the lambda att sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Lineage-specific decay of folate biosynthesis genes suggests ongoing host adaptation in phytoplasmas

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Bacteriophage flux in endosymbionts (Wolbachia): infection frequency, lateral transfer, and recombination rates

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Origins of the mobile gene cassettes found in integrons

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2515622

Effect of indole-3-butyric acid on phytoplasmas in infected Catharanthus roseus shoots grown in vitro

27 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0805237105

Sequence-variable mosaics: composites of recurrent transposition characterizing the genomes of phylogenetically diverse phytoplasmas

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0805237105

Heterogeneic dynamics of the structures of multiple gene clusters in two pathogenetically different lines originating from the same phytoplasma.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0805237105

IslandPath: aiding detection of genomic islands in prokaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0805237105

Effect of phytoplasmal infection on photosystem II efficiency and thylakoid membrane protein changes in field grown apple (Malus pumila) leaves

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0805237105

Pathogenicity of Aster Yellows Phytoplasma andSpiroplasma citrion Periwinkle

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0805237105

Patterns of Segmental Duplication in the Human Genome

21 January 2018

1 reference

12 December 2020

Genomic conflict settled in favour of the species rather than the gene at extreme GC percentage values

1 reference

12 December 2020

Diversity and functional importance of phytoplasma membrane proteins

1 reference

12 December 2020

Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0805237105

1 reference

16 August 2017

0 references

1 reference

16 August 2017

1 reference