(Q36851280)

16 August 2017

Testing homology modeling on mutant proteins: predicting structural and thermodynamic effects in the Ala98-->Val mutants of T4 lysozyme (English)

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16 August 2017

Lee C

1

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16 August 2017

1 January 1996

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16 August 2017

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16 August 2017

1

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16 August 2017

1-12

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16 August 2017

1

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Critical evaluation of comparative model building of Streptomyces griseus trypsin.

16 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Molecular modeling of the HIV-1 protease and its substrate binding site

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Prediction of protein side-chain conformation by packing optimization.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

A new approach to the rapid determination of protein side chain conformations

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

The dead-end elimination theorem and its use in protein side-chain positioning

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Accurate modeling of protein conformation by automatic segment matching

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

A method to configure protein side-chains from the main-chain trace in homology modelling

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Modeling side-chain conformation for homologous proteins using an energy-based rotamer search

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Hydrophobic stabilization in T4 lysozyme determined directly by multiple substitutions of Ile 3

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Enhanced protein thermostability from designed mutations that interact with alpha-helix dipoles

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Structural and thermodynamic analysis of the packing of two alpha-helices in bacteriophage T4 lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

The role of backbone flexibility in the accommodation of variants that repack the core of T4 lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Computational method for the design of enzymes with altered substrate specificity

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Accurate prediction of the stability and activity effects of site-directed mutagenesis on a protein core

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

The crystal structure of a mutant protein with altered but improved hydrophobic core packing

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

The use of side-chain packing methods in modeling bacteriophage repressor and cro proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Optimal sequence selection in proteins of known structure by simulated evolution

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Prediction of the activity and stability effects of site-directed mutagenesis on a protein core

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

A general model of invariant chain association with class II major histocompatibility complex proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Interactions among polymorphic and conserved residues in MHC class II proteins affect MHC-peptide conformation and T cell recognition

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

A self consistent mean field approach to simultaneous gap closure and side-chain positioning in homology modelling

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

A search for the most stable folds of protein chains

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Predicting protein mutant energetics by self-consistent ensemble optimization.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Can the stability of protein mutants be predicted by free energy calculations?

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Structure of the lysozyme from bacteriophage T4: An electron density map at 2.4 Å resolution

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

The Protein Data Bank: a computer-based archival file for macromolecular structures

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

Molecular dynamics of native protein. I. Computer simulation of trajectories

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900006-5

7 January 2021

10.1016/S1359-0278(96)00006-5

Identifiers

DOI

1 reference

16 August 2017

1 reference

PubMed ID

9079358