(Q36882471)

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Whole genome pyrosequencing of rare hepatitis C virus genotypes enhances subtype classification and identification of naturally occurring drug resistance variants.

scientific article published on 6 November 2012

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17 February 2020

Whole genome pyrosequencing of rare hepatitis C virus genotypes enhances subtype classification and identification of naturally occurring drug resistance variants (English)

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17 February 2020

Hepatitis C virus

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based on heuristic

inferred from title

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based on heuristic

inferred from title

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based on heuristic

inferred from title

whole genome sequencing

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based on heuristic

inferred from title

drug resistance

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based on heuristic

inferred from title

8

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17 February 2020

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Ruchi M Newman

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17 February 2020

Thomas Kuntzen

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17 February 2020

Brian Weiner

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17 February 2020

Andrew Berical

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17 February 2020

Patrick Charlebois

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17 February 2020

Carla Kuiken

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17 February 2020

Donald G Murphy

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17 February 2020

Phil Bennett

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17 February 2020

Niall J Lennon

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17 February 2020

Bruce W Birren

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17 February 2020

Michael C Zody

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17 February 2020

Todd M Allen

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17 February 2020

Matthew R Henn

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17 February 2020

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6 November 2012

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17 February 2020

Journal of Infectious Diseases

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17 February 2020

208

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17 February 2020

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17 February 2020

17-31

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17 February 2020

Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666132

29 September 2017

Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection

1 reference

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29 September 2017

Analysis of hepatitis C virus intrahost diversity across the coding region by ultradeep pyrosequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666132

29 September 2017

Preliminary study of two antiviral agents for hepatitis C genotype 1.

1 reference

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29 September 2017

In vitro activity of BMS-790052 on hepatitis C virus genotype 4 NS5A.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666132

29 September 2017

Origin and evolution of the unique hepatitis C virus circulating recombinant form 2k/1b

1 reference

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29 September 2017

Naturally occurring genotype 2b/1a hepatitis C virus in the United States

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666132

29 September 2017

Genetic heterogeneity of hepatitis C virus in association with antiviral therapy determined by ultra-deep sequencing

1 reference

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29 September 2017

Directly acting antivirals against hepatitis C virus

1 reference

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29 September 2017

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

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29 September 2017

Genetic recombination of the hepatitis C virus: clinical implications

1 reference

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29 September 2017

RDP3: a flexible and fast computer program for analyzing recombination

1 reference

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29 September 2017

In vitro resistance profile of the hepatitis C virus NS3/4A protease inhibitor TMC435.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666132

29 September 2017

Induced-fit binding of the macrocyclic noncovalent inhibitor TMC435 to its HCV NS3/NS4A protease target

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666132

29 September 2017

The Evolution of the Major Hepatitis C Genotypes Correlates with Clinical Response to Interferon Therapy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666132

29 September 2017

Complete genomic sequences for hepatitis C virus subtypes 4b, 4c, 4d, 4g, 4k, 4l, 4m, 4n, 4o, 4p, 4q, 4r and 4t.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666132

29 September 2017

Naturally occurring dominant resistance mutations to hepatitis C virus protease and polymerase inhibitors in treatment-naïve patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666132

29 September 2017

Nomenclature and numbering of the hepatitis C virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666132

29 September 2017

A set of reference sequences for the hepatitis C genotypes 4d, 4f, and 4k covering the full open reading frame

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666132

29 September 2017

Selection of Replicon Variants Resistant to ACH-806, a Novel Hepatitis C Virus Inhibitor with No Cross-Resistance to NS3 Protease and NS5B Polymerase Inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666132

29 September 2017

Use of Sequence Analysis of the NS5B Region for Routine Genotyping of Hepatitis C Virus with Reference to C/E1 and 5' Untranslated Region Sequences

1 reference

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29 September 2017

New Natural Intergenotypic (2/5) Recombinant of Hepatitis C Virus

1 reference

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29 September 2017

Serendipitous identification of natural intergenotypic recombinants of hepatitis C in Ireland

1 reference

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29 September 2017

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

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29 September 2017

Identification of a Naturally Occurring Recombinant Genotype 2/6 Hepatitis C Virus

1 reference

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29 September 2017

Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes

1 reference

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29 September 2017

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

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29 September 2017

A Natural Intergenotypic Recombinant of Hepatitis C Virus Identified in St. Petersburg

1 reference

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29 September 2017

Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination

1 reference

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29 September 2017

Antiviral activity of TMC435 monotherapy in patients infected with HCV genotypes 2-6: TMC435-C202, a phase IIa, open-label study

1 reference

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1 reference

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27 June 2018

NS3 protease polymorphism and natural resistance to protease inhibitors in French patients infected with HCV genotypes 1-5.

1 reference

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Near-full genome characterization of unclassified hepatitis C virus strains relating to genotypes 1 and 4.

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Genotypic and phenotypic analysis of variants resistant to hepatitis C virus nonstructural protein 5A replication complex inhibitor BMS-790052 in humans: in vitro and in vivo correlations.

1 reference

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1 reference

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4 September 2018

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1 reference

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1 reference

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4 September 2018

Natural prevalence of hepatitis C virus variants with decreased sensitivity to NS3.4A protease inhibitors in treatment-naive subjects

1 reference

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4 September 2018

Identifiers

10.1093/INFDIS/JIS679

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17 February 2020

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17 February 2020

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17 February 2020

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