(Q36892269)

English

Going where traditional markers have not gone before: utility of and promise for RAD sequencing in marine invertebrate phylogeography and population genomics.

scientific article published on 8 March 2013

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scholarly article

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25 February 2020

Going where traditional markers have not gone before: utility of and promise for RAD sequencing in marine invertebrate phylogeography and population genomics (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23473066%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

0 references

marine invertebrate

1 reference

based on heuristic

inferred from title

Santiago Herrera

2

1 reference

Europe PubMed Central

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25 February 2020

author name string

A M Reitzel

1

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25 February 2020

M J Layden

3

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25 February 2020

M Q Martindale

4

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25 February 2020

T M Shank

5

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25 February 2020

publication date

8 March 2013

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25 February 2020

Molecular Ecology

1 reference

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25 February 2020

22

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25 February 2020

11

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25 February 2020

2953-2970

1 reference

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25 February 2020

Regional differentiation and post-glacial expansion of the Atlantic silverside, Menidia menidia, an annual fish with high dispersal potential.

1 reference

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29 September 2017

Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation

1 reference

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29 September 2017

Estimates of genetic differentiation measured by F(ST) do not necessarily require large sample sizes when using many SNP markers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Connectivity and resilience of coral reef metapopulations in marine protected areas: matching empirical efforts to predictive needs

1 reference

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29 September 2017

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

1 reference

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29 September 2017

Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Stacks: building and genotyping Loci de novo from short-read sequences

1 reference

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29 September 2017

Repetitive elements may comprise over two-thirds of the human genome

1 reference

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29 September 2017

RAD in the realm of next-generation sequencing technologies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

A unique horizontal gene transfer event has provided the octocoral mitochondrial genome with an active mismatch repair gene that has potential for an unusual self-contained function

1 reference

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29 September 2017

Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Quality control and preprocessing of metagenomic datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

A golden age for evolutionary genetics? Genomic studies of adaptation in natural populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Resolving postglacial phylogeography using high-throughput sequencing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Restriction Site Tiling Analysis: accurate discovery and quantitative genotyping of genome-wide polymorphisms using nucleotide arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Molecular systematics of the bubblegum coral genera (Paragorgiidae, Octocorallia) and description of a new deep-sea species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Two alleles of NF-kappaB in the sea anemone Nematostella vectensis are widely dispersed in nature and encode proteins with distinct activities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Reconstructing Indian population history

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Rapid SNP discovery and genetic mapping using sequenced RAD markers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Signatures of selection in natural populations adapted to chronic pollution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Multilocus phylogeography and phylogenetics using sequence-based markers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

A restoration genetics guide for coral reef conservation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Standardizing methods to address clonality in population studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Accuracy and quality of massively parallel DNA pyrosequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

The locus of evolution: evo devo and the genetics of adaptation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

The evolutionary significance of cis-regulatory mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

EVOLUTION IN MENDELIAN POPULATIONS

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Population structure and eigenanalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Principal components analysis corrects for stratification in genome-wide association studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Reefs of the deep: the biology and geology of cold-water coral ecosystems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Genotyping errors, pedigree errors, and missing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Rising starlet: the starlet sea anemone, Nematostella vectensis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Climate change, human impacts, and the resilience of coral reefs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Evolutionary and ecological functional genomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Inference of population structure using multilocus genotype data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Base-calling of automated sequencer traces using phred. II. Error probabilities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

29 September 2017

Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

27 June 2018

Connectivity of marine populations: open or closed?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

27 June 2018

Spatial and temporal patterns of genetic variation in the widespread antitropical deep-sea coral Paragorgia arborea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

4 September 2018

Theoretical limits to the correlation between pelagic larval duration and population genetic structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

4 September 2018

Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

4 September 2018

Molecular phylogenetic insights into the evolution of Octocorallia: a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

4 September 2018

Larval dispersal and marine population connectivity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

4 September 2018

Small-scale genetic structure in a marine population in relation to water circulation and egg characteristics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

4 September 2018

Assessment of the Cape Cod phylogeographic break using the bamboo worm Clymenella torquata reveals the role of regional water masses in dispersal.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

4 September 2018

Microsatellite analysis of the phylogeography, Pleistocene history and secondary contact hypotheses for the killifish, Fundulus heteroclitus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

4 September 2018

The genetic structure of the rare lagoonal sea anemone, Nematostella vectensis Stephenson (Cnidaria; Anthozoa) in the United Kingdom based on RAPD analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669247

4 September 2018

Regional population structure of a widely introduced estuarine invertebrate: Nematostella vectensis Stephenson in New England

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12228

21 January 2018

Human-mediated transport determines the non-native distribution of the anemone Nematostella vectensis, a dispersal-limited estuarine invertebrate

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12228

21 January 2018

The Unique, Widely Distributed, Estuarine Sea Anemone, Nematostella vectensis Stephenson: A Review, New Facts, and Questions

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12228

21 January 2018

Organisms as Ecosystem Engineers

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12228

21 January 2018

Mapping the evolutionary twilight zone: molecular markers, populations and geography

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12228

21 January 2018

Evolutionary and ecological functional genomics

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12228

21 January 2018

Global population genetic structure of the starlet anemone Nematostella vectensis: multiple introductions and implications for conservation policy

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12228

21 January 2018

Level-spacing distributions and the Airy kernel

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12228

21 January 2018

Population genetics, larval dispersal, and connectivity in marine systems

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12228

21 January 2018

The power and promise of population genomics: from genotyping to genome typing

1 reference

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21 January 2018

SNPs in ecology, evolution and conservation

1 reference

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21 January 2018

Efficient genetic markers for population biology

1 reference

https://pubmed.ncbi.nlm.nih.gov/23473066

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sampling within the genome for measuring within-population diversity: trade-offs between markers

1 reference

https://pubmed.ncbi.nlm.nih.gov/23473066

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Global patterns in marine dispersal estimates: the influence of geography, taxonomic category and life history

1 reference

https://pubmed.ncbi.nlm.nih.gov/23473066

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide polymorphisms show unexpected targets of natural selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/23473066

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23473066

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ESTIMATION OF GENE FLOW FROM F-STATISTICS.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23473066

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1111/MEC.12228

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23473066%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23473066%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23473066%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

ResearchGate publication ID

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