(Q36909037)

17 August 2017

Site-specific evolutionary rates in proteins are better modeled as non-independent and strictly relative (English)

1 reference

17 August 2017

Andrew D Fernandes

1

1 reference

17 August 2017

William R Atchley

series ordinal

2

1 reference

17 August 2017

language of work or name

English

0 references

publication date

28 July 2008

1 reference

17 August 2017

7

1 reference

inferred from page(s)

published in

Bioinformatics

1 reference

17 August 2017

24

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17 August 2017

19

1 reference

17 August 2017

2177-2183

1 reference

Among-site rate variation and its impact on phylogenetic analyses

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Gaussian quadrature formulae for arbitrary positive measures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Biochemical and functional evidence of p53 homology is inconsistent with molecular phylogenetics for distant sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Joint Bayesian Estimation of Alignment and Phylogeny

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Sequence signatures and the probabilistic identification of proteins in the Myc-Max-Mad network

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

MrBayes 3: Bayesian phylogenetic inference under mixed models

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Taking variation of evolutionary rates between sites into account in inferring phylogenies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Function and regulation of the transcription factors of the Myc/Max/Mad network

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

The Myc/Max/Mad network and the transcriptional control of cell behavior

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

T-Coffee: A novel method for fast and accurate multiple sequence alignment

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

The Ig fold of the core binding factor alpha Runt domain is a member of a family of structurally and functionally related Ig-fold DNA-binding domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Infinite allele model with varying mutation rate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Modeling nucleotide evolution: a heterogeneous rate analysis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Fitting Discrete Probability Distributions to Evolutionary Events

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

A gamma mixture model better accounts for among site rate heterogeneity

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

A simple hierarchical approach to modeling distributions of substitution rates.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Identifying site-specific substitution rates.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

Site-Specific Evolutionary Rate Inference: Taking Phylogenetic Uncertainty into Account

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553437

DNA-binding by Ig-fold proteins

4 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18662926

12 December 2020

inferred from PubMed ID database lookup

Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18662926

12 December 2020

inferred from PubMed ID database lookup

An invariant form for the prior probability in estimation problems

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18662926

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/BIOINFORMATICS/BTN395

1 reference

journals/bioinformatics/FernandesA08

17 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

17 August 2017

PubMed publication ID

18662926

1 reference