(Q36932804)

17 August 2017

Protein sliding and hopping kinetics on DNA. (English)

1 reference

17 August 2017

Michael C DeSantis

1

1 reference

17 August 2017

Je-Luen Li

series ordinal

2

1 reference

17 August 2017

Y M Wang

series ordinal

3

1 reference

17 August 2017

language of work or name

English

0 references

publication date

16 February 2011

1 reference

17 August 2017

1 reference

17 August 2017

83

1 reference

17 August 2017

2 Pt 1

1 reference

17 August 2017

021907

1 reference

Dynamic strategies for target-site search by DNA-binding proteins

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Thioredoxin suppresses microscopic hopping of T7 DNA polymerase on duplex DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Using the bias from flow to elucidate single DNA repair protein sliding and interactions with DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Uracil DNA glycosylase uses DNA hopping and short-range sliding to trap extrahelical uracils

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Hopping of a processivity factor on DNA revealed by single-molecule assays of diffusion

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Are DNA transcription factor proteins maxwellian demons?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Spatial effects on the speed and reliability of protein-DNA search

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Tumor suppressor p53 slides on DNA with low friction and high stability

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Dynamic basis for one-dimensional DNA scanning by the mismatch repair complex Msh2-Msh6.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Single-molecule analysis of 1D diffusion and transcription elongation of T7 RNA polymerase along individual stretched DNA molecules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Probing transcription factor dynamics at the single-molecule level in a living cell

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Long-distance lateral diffusion of human Rad51 on double-stranded DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

How do site-specific DNA-binding proteins find their targets?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Single-molecule imaging of RNA polymerase-DNA interactions in real time

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

The lac repressor-operator interaction. 3. Kinetic studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

One-dimensional diffusion of Escherichia coli DNA-dependent RNA polymerase: a mechanism to facilitate promoter location

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Theory of site-specific DNA-protein interactions in the presence of conformational fluctuations of DNA binding domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Tracking of single quantum dot labeled EcoRV sliding along DNA manipulated by double optical tweezers.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Quantifying hopping and jumping in facilitated diffusion of DNA-binding proteins.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683889

Facilitated Diffusion of DNA-Binding Proteins

4 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1103%2FPHYSREVE.83.021907

Nonspecific DNA-protein interaction: why proteins can diffuse along DNA

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21405863

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Single molecule measurements of repressor protein 1D diffusion on DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21405863

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Description of nonspecific DNA-protein interaction and facilitated diffusion with a dynamical model

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21405863

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1103/PHYSREVE.83.021907

1 reference

17 August 2017

0 references

1 reference

1 reference

17 August 2017

PubMed publication ID

21405863

1 reference