(Q36995306)

English

DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression

scientific article published on 29 October 2008

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scholarly article

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Europe PubMed Central

PMC publication ID

17 August 2017

DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression (English)

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

DNA methylation

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author name string

Shintaro Yagi

1

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Keiji Hirabayashi

2

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Shinya Sato

3

1 reference

Europe PubMed Central

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17 August 2017

Wei Li

4

1 reference

Europe PubMed Central

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17 August 2017

Yoko Takahashi

5

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Tsutomu Hirakawa

6

1 reference

Europe PubMed Central

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17 August 2017

Guoying Wu

7

1 reference

Europe PubMed Central

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17 August 2017

Naoko Hattori

8

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Naka Hattori

9

1 reference

Europe PubMed Central

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17 August 2017

Jun Ohgane

10

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Satoshi Tanaka

11

1 reference

Europe PubMed Central

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17 August 2017

X Shirley Liu

12

1 reference

Europe PubMed Central

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17 August 2017

Kunio Shiota

13

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Europe PubMed Central

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17 August 2017

publication date

29 October 2008

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Europe PubMed Central

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17 August 2017

Genome Research

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Europe PubMed Central

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17 August 2017

18

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Europe PubMed Central

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17 August 2017

12

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

1969-1978

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Genome-scale DNA methylation maps of pluripotent and differentiated cells

1 reference

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

1 reference

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xMAN: extreme MApping of OligoNucleotides

1 reference

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Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

1 reference

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DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists

1 reference

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29 September 2017

High-resolution profiling of histone methylations in the human genome

1 reference

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g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments

1 reference

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Epigenetic regulation of Nanog gene in embryonic stem and trophoblast stem cells

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Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

1 reference

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1 reference

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1 reference

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The UCSC genome browser database: update 2007.

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Abnormal CpG island methylation occurs during in vitro differentiation of human embryonic stem cells

1 reference

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Comparative isoschizomer profiling of cytosine methylation: the HELP assay

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Evidence for an instructive mechanism of de novo methylation in cancer cells.

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Galaxy: a platform for interactive large-scale genome analysis

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29 September 2017

BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing.

1 reference

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29 September 2017

Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells

1 reference

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29 September 2017

Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity

1 reference

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The MAPPER database: a multi-genome catalog of putative transcription factor binding sites

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Regulatory network of lipid-sensing nuclear receptors: roles for CAR, PXR, LXR, and FXR.

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Bioconductor: open software development for computational biology and bioinformatics

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29 September 2017

Preference of DNA methyltransferases for CpG islands in mouse embryonic stem cells

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An overview of Ensembl

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Control of pancreas and liver gene expression by HNF transcription factors

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RNA-mediated gene silencing

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TM4: a free, open-source system for microarray data management and analysis

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A genome-wide screen for normally methylated human CpG islands that can identify novel imprinted genes

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Large-scale analysis of the human and mouse transcriptomes

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EMBOSS: the European Molecular Biology Open Software Suite

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DNA methylation profiles of CpG islands for cellular differentiation and development in mammals

1 reference

https://pubmed.ncbi.nlm.nih.gov/18971312

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A fraction of the mouse genome that is derived from islands of nonmethylated, CpG-rich DNA

1 reference

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based on heuristic

inferred from PubMed ID database lookup

Modulation of Hepatic Gene Expression by Hepatocyte Nuclear Factor 1

1 reference

https://pubmed.ncbi.nlm.nih.gov/18971312

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection and interpretation of altered methylation patterns in cancer cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/18971312

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide profiling of promoter methylation in human

1 reference

https://pubmed.ncbi.nlm.nih.gov/18971312

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based on heuristic

inferred from PubMed ID database lookup

Cell type-specific methylation profiles occurring disproportionately in CpG-less regions that delineate developmental similarity

1 reference

https://pubmed.ncbi.nlm.nih.gov/18971312

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based on heuristic

inferred from PubMed ID database lookup

Epigenetic marks by DNA methylation specific to stem, germ and somatic cells in mice

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https://pubmed.ncbi.nlm.nih.gov/18971312

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.074070.107

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

ResearchGate publication ID

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