(Q37037867)

17 August 2017

Beyond linear sequence comparisons: the use of genome-level characters for phylogenetic reconstruction (English)

1 reference

17 August 2017

1 reference

Jeffrey L Boore

1

1 reference

PMCID

2614225

17 August 2017

Susan I Fuerstenberg

series ordinal

2

1 reference

PMCID

2614225

17 August 2017

language of work or name

English

0 references

publication date

1 April 2008

1 reference

Philosophical Transactions of the Royal Society B

17 August 2017

1 reference

17 August 2017

363

1 reference

17 August 2017

1496

1 reference

17 August 2017

1445-1451

1 reference

Antibody diversification: mutational mechanisms and oncogenesis

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Genome trees and the nature of genome evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Segmental duplications and copy-number variation in the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Mammalian phylogenomics comes of age

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Large-scale copy number polymorphism in the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Phylogenetic position of the Pentastomida and (pan)crustacean relationships

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Genome-scale phylogeny and the detection of systematic biases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Retroposon mapping in molecular systematics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

NUMTs in sequenced eukaryotic genomes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Driving change: the evolution of alternative genetic codes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Alu elements and hominid phylogenetics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

The mitochondrial genome of the Sipunculid Phascolopsis gouldii supports its association with Annelida rather than Mollusca

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Retroposon analysis of major cetacean lineages: the monophyly of toothed whales and the paraphyly of river dolphins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

SINE insertions in cladistic analyses and the phylogenetic affiliations of Tarsius bancanus to other primates

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Changes in mitochondrial genetic codes as phylogenetic characters: two examples from the flatworms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Whole genome-based phylogenetic analysis of free-living microorganisms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Late changes in spliceosomal introns define clades in vertebrate evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Phylogenetic relationships among cetartiodactyls based on insertions of short and long interpersed elements: hippopotamuses are the closest extant relatives of whales

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Hox genes in brachiopods and priapulids and protostome evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Animal evolution. The end of the intermediate taxa?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Animal mitochondrial genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Genome phylogeny based on gene content

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Mitochondrial DNA-like sequences in the human nuclear genome. Characterization and implications in the evolution of mitochondrial DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Transcription and replication of animal mitochondrial DNAs.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Complete sequence of the mitochondrial genome of the tapeworm Hymenolepis diminuta: gene arrangements indicate that Platyhelminths are Eutrochozoans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

RNA-mediated transfer of the gene coxII from the mitochondrion to the nucleus during flowering plant evolution

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614225

Big trees from little genomes: mitochondrial gene order as a phylogenetic tool.

27 June 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2234

Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2234

Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2234

Gene translocation links insects and crustaceans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2234

Using homolog groups to create a whole-genomic tree of free-living organisms: an update.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2234

Phylogenetic trees based on gene content

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2234

The value of idiosyncratic markers and changes to conserved tRNA sequences from the mitochondrial genome of hard ticks (Acari: Ixodida: Ixodidae) for phylogenetic inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2234

Amphioxus mitochondrial DNA, chordate phylogeny, and the limits of inference based on comparisons of sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2234

The gain of three mitochondrial introns identifies liverworts as the earliest land plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2234

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2234

The mitochondrial genome of Phoronis architecta--comparisons demonstrate that phoronids are lophotrochozoan protostomes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18192190

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

How good are deep phylogenetic trees?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18192190

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The use of genome-level characters for phylogenetic reconstruction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18192190

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1098/RSTB.2007.2234

1 reference

17 August 2017

1 reference

17 August 2017

1 reference

PMCID

2614225