(Q37037870)

17 August 2017

1 reference

title

The animal in the genome: comparative genomics and evolution (English)

1 reference

17 August 2017

1 reference

Richard R Copley

1

1 reference

PMC publication ID

2614226

17 August 2017

language of work or name

English

0 references

publication date

1 April 2008

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17 August 2017

9

1 reference

Philosophical Transactions of the Royal Society B

inferred from page(s)

published in

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17 August 2017

363

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17 August 2017

1496

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17 August 2017

1453-1461

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Nuclear hormone receptors in C. elegans

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

An Atomic Model of the Interferon-β Enhanceosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

The stars and stripes of animal bodies: evolution of regulatory elements mediating pigment and bristle patterns in Drosophila

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

An analysis of the gene complement of a marsupial, Monodelphis domestica: evolution of lineage-specific genes and giant chromosomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

The locus of evolution: evo devo and the genetics of adaptation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

The evolutionary significance of cis-regulatory mutations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Different levels of alternative splicing among eukaryotes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

In vivo enhancer analysis of human conserved non-coding sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Large-scale turnover of functional transcription factor binding sites in Drosophila

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

A murine specific expansion of the Rhox cluster involved in embryonic stem cell biology is under natural selection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Early evolution of animal cell signaling and adhesion genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Intronic alternative splicing regulators identified by comparative genomics in nematodes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Intrinsic disorder in transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

SMART 5: domains in the context of genomes and networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Pfam: clans, web tools and services

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Genomics in C. elegans: so many genes, such a little worm

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

The EH1 motif in metazoan transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Systematic discovery of new recognition peptides mediating protein interaction networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Linear motifs: evolutionary interaction switches.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Ultraconserved elements in insect genomes: a highly conserved intronic sequence implicated in the control of homothorax mRNA splicing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Intrinsically unstructured proteins and their functions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Identification and analysis of alternative splicing events conserved in human and mouse

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Rhox: a new homeobox gene cluster

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Highly conserved non-coding sequences are associated with vertebrate development

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Mice exclusively expressing the short isoform of Smad2 develop normally and are viable and fertile.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Alternative splicing of mouse transcription factors affects their DNA-binding domain architecture and is tissue specific

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

TBX3 and its isoform TBX3+2a are functionally distinctive in inhibition of senescence and are overexpressed in a subset of breast cancer cell lines

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Comparative evolutionary genomics of androgen-binding protein genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Ultraconserved Elements in the Human Genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Evolutionary convergence of alternative splicing in ion channels

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Evolution and comparative genomics of odorant- and pheromone-associated genes in rodents

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Structure of HoxA9 and Pbx1 bound to DNA: Hox hexapeptide and DNA recognition anterior to posterior

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Intronic sequences flanking alternatively spliced exons are conserved between human and mouse

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

The evolution of transcriptional regulation in eukaryotes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Comparison of the genomes of human and mouse lays the foundation of genome zoology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Of urchins and men: evolution of an alternative splicing unit in fibroblast growth factor receptor genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

The evolution of signalling pathways in animal development

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Alternative splicing and genome complexity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Genome-wide detection of alternative splicing in expressed sequences of human genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Mh1 domain of Smad is a degraded homing endonuclease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Initial sequencing and analysis of the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

The Sequence of the Human Genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

Evidence for stabilizing selection in a eukaryotic enhancer element.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

SCOP: a structural classification of proteins database for the investigation of sequences and structures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

A regulatory code for neurogenic gene expression in the Drosophila embryo

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614226

The molecular elements that underlie developmental evolution.

27 June 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

Meisetz and the birth of the KRAB motif.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

Lineage-specific expansion of the zinc finger associated domain ZAD.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

DNA recognition by the brinker repressor--an extreme case of coupling between binding and folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

Pleiotropic functions of a conserved insect-specific Hox peptide motif.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

Homeodomain to hexapeptide or PBC-interaction-domain distance: size apparently matters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

Cofactor-interaction motifs and the cooption of a homeotic Hox protein into the segmentation pathway of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

Rapid restructuring of bicoid-dependent hunchback promoters within and between Dipteran species: implications for molecular coevolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

Distinct functions of homeodomain-containing and homeodomain-less isoforms encoded by homothorax.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

An ancient transcriptional regulatory linkage

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

Functional tests of enhancer conservation between distantly related species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

Coevolution in bicoid-dependent promoters and the inception of regulatory incompatibilities among species of higher Diptera.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

Structure of an activated Dictyostelium STAT in its DNA-unbound form

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

The relationship between non-protein-coding DNA and eukaryotic complexity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

Evolutionarily conserved domains required for activation and repression functions of the Drosophila Hox protein Ultrabithorax.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

The evolution of abdominal reduction and the recent origin of distinct Abdominal-B transcript classes in Diptera

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2007.2235

How many genes in the human genome?

21 January 2018

1 reference

12 December 2020

When Brachyury meets Smad1: the evolution of bilateral symmetry during gastrulation

1 reference

12 December 2020

Conservation of RET regulatory function from human to zebrafish without sequence similarity

1 reference

12 December 2020

Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation

1 reference

12 December 2020

Early embryonic programming of neuronal left/right asymmetry in C. elegans

1 reference

12 December 2020

Balancing BMP Signaling through Integrated Inputs into the Smad1 Linker

1 reference

12 December 2020

Genetics. Working the (gene count) numbers: finally, a firm answer?

1 reference

12 December 2020

The nature of the number

1 reference

12 December 2020

1 reference

12 December 2020

Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation

1 reference

12 December 2020

Identifiers

DOI

10.1098/RSTB.2007.2235

1 reference

17 August 2017

1 reference

PMC publication ID

2614226

17 August 2017

PubMed publication ID

18192189

1 reference

PMC publication ID

2614226