(Q37083941)

English

Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network.

scientific article published on March 2009

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18704931%20AND%20SRC:MED&resulttype=core&format=json

12 January 2020

Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18704931%20AND%20SRC:MED&resulttype=core&format=json

12 January 2020

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18704931%20AND%20SRC:MED&resulttype=core&format=json

12 January 2020

author name string

Eshel Faraggi

1

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Europe PubMed Central

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12 January 2020

Bin Xue

2

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Europe PubMed Central

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12 January 2020

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publication date

1 March 2009

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12 January 2020

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18704931%20AND%20SRC:MED&resulttype=core&format=json

12 January 2020

74

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12 January 2020

4

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12 January 2020

847-856

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18704931%20AND%20SRC:MED&resulttype=core&format=json

12 January 2020

SP5: improving protein fold recognition by using torsion angle profiles and profile-based gap penalty model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Tuning of the structure and parameters of a neural network using an improved genetic algorithm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Real-value prediction of backbone torsion angles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Achieving 80% ten-fold cross-validated accuracy for secondary structure prediction by large-scale training.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Support vector machines for prediction of dihedral angle regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Neural networks convergence using physicochemical data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Reducing the dimensionality of data with neural networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

A machine learning information retrieval approach to protein fold recognition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Tuning the structure and parameters of a neural network by using hybrid Taguchi-genetic algorithm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

QBES: predicting real values of solvent accessibility from sequences by efficient, constrained energy optimization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Accurate prediction of solvent accessibility using neural networks-based regression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Protein backbone angle prediction with machine learning approaches.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

The general inefficiency of batch training for gradient descent learning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Review: protein secondary structure prediction continues to rise.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Protein fold recognition by prediction-based threading

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

Local backbone structure prediction of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

29 September 2017

TOPITS: threading one-dimensional predictions into three-dimensional structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

27 June 2018

Self-learning fuzzy controllers based on temporal backpropagation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

3 September 2018

Statistically controlled activation weight initialization (SCAWI).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

3 September 2018

Training feedforward networks with the Marquardt algorithm.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

3 September 2018

Real-SPINE: an integrated system of neural networks for real-value prediction of protein structural properties.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

3 September 2018

SSALN: an alignment algorithm using structure-dependent substitution matrices and gap penalties learned from structurally aligned protein pairs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

3 September 2018

Prediction and evolutionary information analysis of protein solvent accessibility using multiple linear regression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

3 September 2018

Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

3 September 2018

Prediction of protein accessible surface areas by support vector regression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

3 September 2018

Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

3 September 2018

Real value prediction of solvent accessibility from amino acid sequence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

3 September 2018

A global optimum approach for one-layer neural networks.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

3 September 2018

Fold recognition by concurrent use of solvent accessibility and residue depth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

4 December 2018

Protein Structural Motif Prediction in Multidimensional ø-ψ Space Leads to Improved Secondary Structure Prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2635924

4 December 2018

Optimization for training neural nets

1 reference

https://pubmed.ncbi.nlm.nih.gov/18704931

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein secondary structure prediction with dihedral angles

1 reference

https://pubmed.ncbi.nlm.nih.gov/18704931

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improving fold recognition without folds

1 reference

https://pubmed.ncbi.nlm.nih.gov/18704931

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimation and use of protein backbone angle probabilities

1 reference

https://pubmed.ncbi.nlm.nih.gov/18704931

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/PROT.22193

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18704931%20AND%20SRC:MED&resulttype=core&format=json

12 January 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18704931%20AND%20SRC:MED&resulttype=core&format=json

12 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18704931%20AND%20SRC:MED&resulttype=core&format=json

12 January 2020

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