(Q37089369)

18 August 2017

Adaptive evolution in the Arabidopsis MADS-box gene family inferred from its complete resolved phylogeny (English)

1 reference

18 August 2017

1 reference

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14597714

28 March 2024

corrigendum / erratum

Correction

1 reference

based on heuristic

inferred from abstract

author name string

León Patricio Martinez-Castilla

series ordinal

1

1 reference

PMCID

263827

18 August 2017

Elena R. Alvarez-Buylla

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14597714

28 March 2024

language of work or name

English

0 references

publication date

3 November 2003

1 reference

PMCID

263827

full work available at URL

18 August 2017

https://europepmc.org/articles/pmc263827?pdf=render

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14597714

https://europepmc.org/articles/PMC263827

28 March 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14597714

https://europepmc.org/articles/PMC263827?pdf=render

28 March 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14597714

https://doi.org/10.1073/pnas.1835864100

28 March 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14597714

https://pnas.org/doi/pdf/10.1073/pnas.1835864100

28 March 2024

1 reference

https://api.crossref.org/works/10.1073/PNAS.1835864100

Proceedings of the National Academy of Sciences of the United States of America

28 March 2024

published in

1 reference

18 August 2017

100

1 reference

18 August 2017

13407-13412

1 reference

18 August 2017

23

1 reference

The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1.

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Functional divergence within the APETALA3/PISTILLATA floral homeotic gene lineages

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

The hidden duplication past of Arabidopsis thaliana

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Two ancient classes of MIKC-type MADS-box genes are present in the moss Physcomitrella patens

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

The probability of preservation of a newly arisen gene duplicate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

MEGA2: molecular evolutionary genetics analysis software

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

MRBAYES: Bayesian inference of phylogenetic trees

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Positive Darwinian selection drives the evolution of several female reproductive proteins in mammals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

MADS-box gene evolution beyond flowers: expression in pollen, endosperm, guard cells, roots and trichomes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Statistical methods for detecting molecular adaptation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

The evolutionary fate and consequences of duplicate genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Purifying selection and birth-and-death evolution in the ubiquitin gene family

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Solution structure of the MEF2A-DNA complex: structural basis for the modulation of DNA bending and specificity by MADS-box transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

An ancestral MADS-box gene duplication occurred before the divergence of plants and animals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Codon-substitution models for heterogeneous selection pressure at amino acid sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Crystal structure of MEF2A core bound to DNA at 1.5 A resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Redundant regulation of meristem identity and plant architecture by FRUITFULL, APETALA1 and CAULIFLOWER.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Preservation of duplicate genes by complementary, degenerative mutations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Molecular population genetics of the Arabidopsis CAULIFLOWER regulatory gene: nonneutral evolution and naturally occurring variation in floral homeotic function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Molecular evolution of genes controlling petal and stamen development: duplication and divergence within the APETALA3 and PISTILLATA MADS-box gene lineages

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Positive Darwinian selection after gene duplication in primate ribonuclease genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

MADS domain proteins in plant development.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

PAML: a program package for phylogenetic analysis by maximum likelihood

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

DNA-binding properties of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA and AGAMOUS.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Mapping the protein regions responsible for the functional specificities of the Arabidopsis MADS domain organ-identity proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Invasion and maintenance of a gene duplication

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

A codon-based model of nucleotide substitution for protein-coding DNA sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Structure of serum response factor core bound to DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Diverse roles for MADS box genes in Arabidopsis development

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Floral homeotic mutations produced by transposon-mutagenesis in Antirrhinum majus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Genetic interactions among floral homeotic genes of Arabidopsis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Transcriptional regulators and the evolution of plant form.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

Episodic adaptive evolution of primate lysozymes.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

The homeotic gene APETALA3 of Arabidopsis thaliana encodes a MADS box and is expressed in petals and stamens

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263827

The molecular evolution of development

27 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

The MADS-box floral homeotic gene lineages predate the origin of seed plants: phylogenetic and molecular clock estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

Genetic Control of Flower Development by Homeotic Genes in Antirrhinum majus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

MADS-box gene evolution-structure and transcription patterns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

Molecular cloning of SVP: a negative regulator of the floral transition in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

Analysis of the Arabidopsis MADS AFFECTING FLOWERING gene family: MAF2 prevents vernalization by short periods of cold.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

The origins of genomic duplications in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

Evolution of gene families

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

Adaptive evolution after gene duplication

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

AGL24acts as a promoter of flowering inArabidopsisand is positively regulated by vernalization

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1835864100

Molecular Biology and Evolution

21 January 2018

31

11

725

1994

1 reference

https://api.crossref.org/works/10.1073/PNAS.1835864100

Computer applications in the biosciences : CABIOS

28 March 2024

34

13

555

1997

1 reference

https://api.crossref.org/works/10.1073/PNAS.1835864100

Journal of Biological Chemistry

28 March 2024

43

378

1079

1997

1 reference

https://api.crossref.org/works/10.1073/PNAS.1835864100

28 March 2024

Identifiers

1 reference

18 August 2017

0 references

1 reference

18 August 2017

1 reference

PMCID

263827