(Q37097624)

English

Creating a dynamic picture of the sliding clamp during T4 DNA polymerase holoenzyme assembly by using fluorescence resonance energy transfer

scientific article published on July 2001

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scholarly article

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9 November 2019

Creating a dynamic picture of the sliding clamp during T4 DNA polymerase holoenzyme assembly by using fluorescence resonance energy transfer (English)

1 reference

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11459977%20AND%20SRC:MED&resulttype=core&format=json

9 November 2019

Michael Trakselis

1

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9 November 2019

author name string

S C Alley

2

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9 November 2019

E Abel-Santos

3

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9 November 2019

S J Benkovic

4

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9 November 2019

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publication date

1 July 2001

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9 November 2019

Proceedings of the National Academy of Sciences of the United States of America

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9 November 2019

98

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9 November 2019

8368-8375

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9 November 2019

15

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9 November 2019

A tale of toroids in DNA metabolism.

1 reference

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29 September 2017

Replisome-mediated DNA replication.

1 reference

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29 September 2017

Characterization of bacteriophage T4-coordinated leading- and lagging-strand synthesis on a minicircle substrate

1 reference

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29 September 2017

The human Rad52 protein exists as a heptameric ring

1 reference

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29 September 2017

DNA replication at high resolution.

1 reference

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29 September 2017

Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage

1 reference

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29 September 2017

The structure of Escherichia coli DNA topoisomerase III

1 reference

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29 September 2017

Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7

1 reference

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29 September 2017

Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Division of labor--sequential ATP hydrolysis drives assembly of a DNA polymerase sliding clamp around DNA.

1 reference

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29 September 2017

Human Dmc1 protein binds DNA as an octameric ring.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

The carboxyl terminus of the bacteriophage T4 DNA polymerase contacts its sliding clamp at the subunit interface

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

DNA helicases displace streptavidin from biotin-labeled oligonucleotides

1 reference

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29 September 2017

Rings and filaments of beta protein from bacteriophage lambda suggest a superfamily of recombination proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

The DNA replication fork in eukaryotic cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Pre-steady state analysis of the assembly of wild type and mutant circular clamps of Escherichia coli DNA polymerase III onto DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

ATP binding to the Escherichia coli clamp loader powers opening of the ring-shaped clamp of DNA polymerase III holoenzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Polymerases and the replisome: machines within machines.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Toroidal structure of lambda-exonuclease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Fluorescence monitoring of T4 polymerase holoenzyme accessory protein interactions during loading of the sliding clamp onto the template-primer junction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

The carboxyl terminus of the bacteriophage T4 DNA polymerase is required for holoenzyme complex formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Mechanisms of helicase-catalyzed DNA unwinding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Construction and characterization of a bacteriophage T4 DNA polymerase deficient in 3'-->5' exonuclease activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Rapid assembly of the bacteriophage T4 core replication complex on a linear primer/template construct

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Smart machines at the DNA replication fork.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Sliding clamps of DNA polymerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Bacteriophage T7 helicase/primase proteins form rings around single-stranded DNA that suggest a general structure for hexameric helicases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Fine balance in the regulation of DnaB helicase by DnaC protein in replication in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Protein‐protein interactions at a DNA replication fork: bacteriophage T4 as a model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

DNA replication with bacteriophage T4 proteins. Purification of the proteins encoded by T4 genes 41, 45, 44, and 62 using a complementation assay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

29 September 2017

Molecular mechanism and energetics of clamp assembly in Escherichia coli. The role of ATP hydrolysis when gamma complex loads beta on DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

27 June 2018

Sliding clamp of the bacteriophage T4 polymerase has open and closed subunit interfaces in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

27 June 2018

The internal workings of a DNA polymerase clamp-loading machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

27 June 2018

Assembly and disassembly of DNA polymerase holoenzyme.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

27 June 2018

Dynamics of loading the beta sliding clamp of DNA polymerase III onto DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

27 June 2018

The 44P subunit of the T4 DNA polymerase accessory protein complex catalyzes ATP hydrolysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

27 June 2018

Effect of the orientation of donor and acceptor on the probability of energy transfer involving electronic transitions of mixed polarization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=37445

27 June 2018

Accessory proteins function as matchmakers in the assembly of the T4 DNA polymerase holoenzyme.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

Modular organization of T4 DNA polymerase. Evidence from phylogenetics

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

Tracking sliding clamp opening and closing during bacteriophage T4 DNA polymerase holoenzyme assembly.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

Fluorescence resonance energy transfer

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

Electron microscopic observation and single-stranded DNA binding activity of the Mcm4,6,7 complex.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

The HexamericE. coliDnaB Helicase can Exist in Different Quarternary States

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

Crystallization of Proliferating Cell Nuclear Antigen (PCNA) from Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

Role of adenosine 5'-triphosphate hydrolysis in the assembly of the bacteriophage T4 DNA replication holoenzyme complex

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. III. The Gp43 DNA polymerase binds to the same face of the sliding clamp as the clamp loader

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. II. The Gp44/62 clamp loader interacts with a single defined face of the sliding clamp ring

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

Dissecting the order of bacteriophage T4 DNA polymerase holoenzyme assembly

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

Protein-protein and protein-DNA interactions at the bacteriophage T4 DNA replication fork. Characterization of a fluorescently labeled DNA polymerase sliding clamp

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

The kinetic mechanism of formation of the bacteriophage T4 DNA polymerase sliding clamp

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

Interaction of alpha-dansylated peptide inhibitors with porcine pepsin: detection of complex formation by fluorescence energy transfer and chromatography and evidence for a two-step binding scheme

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. I. Conformational changes within the gp44/62-gp45-ATP complex during clamp loading

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

The phage T4-coded DNA replication helicase (gp41) forms a hexamer upon activation by nucleoside triphosphate

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.111006698

21 January 2018

The gene 59 protein of bacteriophage T4 modulates the intrinsic and single-stranded DNA-stimulated ATPase activities of gene 41 protein, the T4 replicative DNA helicase

1 reference

https://pubmed.ncbi.nlm.nih.gov/11459977

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dual role of the 44/62 protein as a matchmaker protein and DNA polymerase chaperone during assembly of the bacteriophage T4 holoenzyme complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/11459977

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1073/PNAS.111006698

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11459977%20AND%20SRC:MED&resulttype=core&format=json

9 November 2019

2001PNAS...98.8368T

0 references

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11459977%20AND%20SRC:MED&resulttype=core&format=json

9 November 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11459977%20AND%20SRC:MED&resulttype=core&format=json

9 November 2019

ResearchGate publication ID

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