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Characterization of LD structures and the utility of HapMap in genetic association studies.
scientific article published on January 2008
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Europe PubMed Central
PubMed publication ID
18358328
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18358328%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 January 2020
review article
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Europe PubMed Central
title
Characterization of LD structures and the utility of HapMap in genetic association studies
(English)
1 reference
stated in
Europe PubMed Central
PubMed publication ID
18358328
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18358328%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 January 2020
author
Charles C Gu
series ordinal
1
1 reference
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Europe PubMed Central
PubMed publication ID
18358328
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18358328%20AND%20SRC:MED&resulttype=core&format=json
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4 January 2020
author name string
Kai Yu
series ordinal
2
1 reference
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Europe PubMed Central
PubMed publication ID
18358328
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18358328%20AND%20SRC:MED&resulttype=core&format=json
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4 January 2020
D C Rao
series ordinal
3
1 reference
stated in
Europe PubMed Central
PubMed publication ID
18358328
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18358328%20AND%20SRC:MED&resulttype=core&format=json
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4 January 2020
publication date
1 January 2008
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Europe PubMed Central
PubMed publication ID
18358328
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18358328%20AND%20SRC:MED&resulttype=core&format=json
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4 January 2020
published in
Advances in Genetics
1 reference
stated in
Europe PubMed Central
PubMed publication ID
18358328
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18358328%20AND%20SRC:MED&resulttype=core&format=json
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4 January 2020
volume
60
1 reference
stated in
Europe PubMed Central
PubMed publication ID
18358328
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18358328%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 January 2020
page(s)
407-435
1 reference
stated in
Europe PubMed Central
PubMed publication ID
18358328
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18358328%20AND%20SRC:MED&resulttype=core&format=json
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4 January 2020
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Transferability of tag SNPs in genetic association studies in multiple populations
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Haplotype identity between individuals who share a CFTR mutation allele "identical by descent": demonstration of the usefulness of the haplotype-sharing concept for gene mapping in real populations
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Methods for the selection of tagging SNPs: a comparison of tagging efficiency and performance
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The effect of haplotype-block definitions on inference of haplotype-block structure and htSNPs selection.
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The extent of linkage disequilibrium in four populations with distinct demographic histories
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The structure of haplotype blocks in the human genome
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Significant variation in haplotype block structure but conservation in tagSNP patterns among global populations
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On transferability of genome-wide tagSNPs.
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Entropy-based SNP selection for genetic association studies
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The family based association test method: strategies for studying general genotype--phenotype associations.
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Haplotype tagging for the identification of common disease genes
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Efficient selective screening of haplotype tag SNPs
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A comparison of tagging methods and their tagging space.
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Prospects for whole-genome linkage disequilibrium mapping of common disease genes
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A multivariate family-based association test using generalized estimating equations: FBAT-GEE.
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Evaluating statistical significance in two-stage genomewide association studies
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Finding haplotype tagging SNPs by use of principal components analysis
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Haplotype block structures show significant variation among populations
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Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to fine-scale genetic mapping
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Selection of genetic markers for association analyses, using linkage disequilibrium and haplotypes.
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An evaluation of the performance of tag SNPs derived from HapMap in a Caucasian population
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Little loss of information due to unknown phase for fine-scale linkage-disequilibrium mapping with single-nucleotide-polymorphism genotype data.
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On the advantage of haplotype analysis in the presence of multiple disease susceptibility alleles
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Linkage disequilibrium patterns and tagSNP transferability among European populations
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Effect of two- and three-locus linkage disequilibrium on the power to detect marker/phenotype associations.
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Investigation of the Ability of Haplotype Association and Logistic Regression to Identify Associated Susceptibility Loci
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A simple correction for multiple testing for single-nucleotide polymorphisms in linkage disequilibrium with each other
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Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21.
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Association mapping in structured populations
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Evaluating HapMap SNP data transferability in a large-scale genotyping project involving 175 cancer-associated genes
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Genetic variation in the 5q31 cytokine gene cluster confers susceptibility to Crohn disease
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The future of genetic studies of complex human diseases
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Comparison of prospective and retrospective methods for haplotype inference in case-control studies.
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based on heuristic
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Minimal haplotype tagging
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7 January 2021
based on heuristic
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Tag SNPs chosen from HapMap perform well in several population isolates
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based on heuristic
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Haplotype sharing transmission/disequilibrium tests that allow for genotyping errors
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7 January 2021
based on heuristic
inferred from DOI database lookup
iHAP--integrated haplotype analysis pipeline for characterizing the haplotype structure of genes
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7 January 2021
based on heuristic
inferred from DOI database lookup
Choosing haplotype-tagging SNPS based on unphased genotype data using a preliminary sample of unrelated subjects with an example from the Multiethnic Cohort Study
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7 January 2021
based on heuristic
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A scan statistic for identifying chromosomal patterns of SNP association
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based on heuristic
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Estimation of individual admixture: analytical and study design considerations
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7 January 2021
based on heuristic
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Genomic sharing surrounding alleles identical by descent: effects of genetic drift and population growth
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7 January 2021
based on heuristic
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The International HapMap Project
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7 January 2021
based on heuristic
inferred from DOI database lookup
A haplotype map of the human genome
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
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inferred from DOI database lookup
On the identification of disease mutations by the analysis of haplotype similarity and goodness of fit.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination, and mutation
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Selection and evaluation of tagging SNPs in the neuronal-sodium-channel gene SCN1A: implications for linkage-disequilibrium gene mapping
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Generalized genomic distance-based regression methodology for multilocus association analysis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The value of gene-based selection of tag SNPs in genome-wide association studies
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Generalized T2 test for genome association studies
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A sliding-window weighted linkage disequilibrium test.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Genetic association mapping under founder heterogeneity via weighted haplotype similarity analysis in candidate genes.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Classifying disease chromosomes arising from multiple founders, with application to fine-scale haplotype mapping
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Global transmission/disequilibrium tests based on haplotype sharing in multiple candidate genes.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A Haplotype Similarity Based Transmission/Disequilibrium Test under Founder Heterogeneity
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An evaluation of HapMap sample size and tagging SNP performance in large-scale empirical and simulated data sets
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A dynamic programming algorithm for haplotype block partitioning
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Transmission/disequilibrium test based on haplotype sharing for tightly linked markers
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-2660%2807%2900415-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0065-2660(07)00415-4
1 reference
stated in
Europe PubMed Central
PubMed publication ID
18358328
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18358328%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 January 2020
PubMed publication ID
18358328
1 reference
stated in
Europe PubMed Central
PubMed publication ID
18358328
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18358328%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 January 2020
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