(Q37249163)

English

Does water relay play an important role in phosphoryl transfer reactions? Insights from theoretical study of a model reaction in water and tert-butanol

scientific article published on April 2009

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Does water relay play an important role in phosphoryl transfer reactions? Insights from theoretical study of a model reaction in water and tert-butanol (English)

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

author name string

Yang Yang

1

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Qiang Cui

2

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

language of work or name

0 references

publication date

1 April 2009

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

number of pages

10

1 reference

based on heuristic

inferred from page(s)

Journal of Physical Chemistry B

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

113

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

14

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

4930-4939

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2705241

6 September 2017

Description of phosphate hydrolysis reactions with the Self-Consistent-Charge Density-Functional-Tight-Binding (SCC-DFTB) theory. 1. Parameterization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2705241

6 September 2017

Electrostatic interactions in the hairpin ribozyme account for the majority of the rate acceleration without chemical participation by nucleobases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2705241

6 September 2017

Origin of mutational effects at the C3 and G8 positions on hammerhead ribozyme catalysis from molecular dynamics simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2705241

6 September 2017

Quantum mechanical/molecular mechanical simulation study of the mechanism of hairpin ribozyme catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2705241

6 September 2017

Enzymatic mechanisms of phosphate and sulfate transfer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2705241

6 September 2017

Computer simulations of enzyme catalysis: methods, progress, and insights

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2705241

6 September 2017

Quantum mechanical methods for enzyme kinetics

1 reference

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Ribozyme structures and mechanisms

1 reference

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6 September 2017

Mechanistic alternatives in phosphate monoester hydrolysis: what conclusions can be drawn from available experimental data?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2705241

6 September 2017

Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density

1 reference

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6 September 2017

Density-functional exchange-energy approximation with correct asymptotic behavior

1 reference

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6 September 2017

VMD: visual molecular dynamics

1 reference

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6 September 2017

The structural basis of the myosin ATPase activity

1 reference

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6 September 2017

X-ray structure of the magnesium(II).ADP.vanadate complex of the Dictyostelium discoideum myosin motor domain to 1.9 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2705241

6 September 2017

Biological catalysis by RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2705241

6 September 2017

How does GAP catalyze the GTPase reaction of Ras? A computer simulation study

1 reference

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26 June 2018

Mechanistic aspects of enzymatic catalysis: lessons from comparison of RNA and protein enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2705241

26 June 2018

Associative versus dissociative mechanisms of phosphate monoester hydrolysis: on the interpretation of activation entropies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2705241

3 September 2018

Proton transfer in carbonic anhydrase is controlled by electrostatics rather than the orientation of the acceptor

1 reference

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3 September 2018

On the mechanism of hydrolysis of phosphate monoesters dianions in solutions and proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2705241

3 September 2018

Development of effective quantum mechanical/molecular mechanical (QM/MM) methods for complex biological processes.

1 reference

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3 September 2018

Reliable treatment of electrostatics in combined QM/MM simulation of macromolecules

1 reference

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3 September 2018

Mechanisms of signaling and related enzymes

1 reference

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3 September 2018

Pseudorotation of natural and chemically modified biological phosphoranes: implications for RNA catalysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19292432

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Importance of van der Waals Interactions in QM/MM Simulations

1 reference

https://pubmed.ncbi.nlm.nih.gov/19292432

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleophilic attack on phosphate diesters: a density functional study of in-line reactivity in dianionic, monoanionic, and neutral systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/19292432

12 December 2020

based on heuristic

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On the mechanism of guanosine triphosphate hydrolysis in ras p21 proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/19292432

12 December 2020

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inferred from PubMed ID database lookup

Pyruvate kinase: is the mechanism of phospho transfer associative or dissociative?

1 reference

https://pubmed.ncbi.nlm.nih.gov/19292432

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pseudorotation barriers of biological oxyphosphoranes: a challenge for simulations of ribozyme catalysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19292432

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alanine scanning mutagenesis of the switch I region in the ATPase site of Dictyostelium discoideum myosin II

1 reference

https://pubmed.ncbi.nlm.nih.gov/19292432

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origin of life: The RNA world

1 reference

4 November 2023

https://opencitations.net/index/coci/api/v1/citations/10.1038/319618A0

Identifiers

10.1021/JP810755P

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

ResearchGate publication ID

0 references

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