(Q37294442)

English

Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism.

scientific article published on August 2009

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scholarly article

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27 January 2020

Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism (English)

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27 January 2020

protein folding

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27 January 2020

author name string

Giulia Friso

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27 January 2020

Jitae Kim

3

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27 January 2020

Andrea Rudella

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27 January 2020

Verenice Ramírez Rodríguez

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27 January 2020

Yukari Asakura

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27 January 2020

Qi Sun

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27 January 2020

Klaas J van Wijk

8

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27 January 2020

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1 August 2009

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27 January 2020

Molecular & Cellular Proteomics

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27 January 2020

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27 January 2020

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27 January 2020

1789-1810

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27 January 2020

Targeting of nucleus-encoded proteins to chloroplasts in plants

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A cyclophilin links redox and light signals to cysteine biosynthesis and stress responses in chloroplasts

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The steady-state level of Mg-protoporphyrin IX is not a determinant of plastid-to-nucleus signaling in Arabidopsis.

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Turnover of endogenous SsrA-tagged proteins mediated by ATP-dependent proteases in Escherichia coli

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Mechanisms of protein import into thylakoids of chloroplasts.

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Plants need their vitamins too.

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The balance between protein synthesis and degradation in chloroplasts determines leaf variegation in Arabidopsis yellow variegated mutants

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Signals from chloroplasts converge to regulate nuclear gene expression

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Clp protease controls chlorophyll b synthesis by regulating the level of chlorophyllide a oxygenase

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Variegation mutants and mechanisms of chloroplast biogenesis

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Two novel mitochondrial and chloroplastic targeting-peptide-degrading peptidasomes in A. thaliana, AtPreP1 and AtPreP2.

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

Isoprenoid biosynthesis in plant chloroplasts via the MEP pathway: direct thylakoid/ferredoxin-dependent photoreduction of GcpE/IspG.

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6 September 2017

Complete maturation of the plastid protein translocation channel requires a type I signal peptidase.

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6 September 2017

The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts.

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6 September 2017

Two novel targeting peptide degrading proteases, PrePs, in mitochondria and chloroplasts, so similar and still different.

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6 September 2017

RNR1, a 3'-5' exoribonuclease belonging to the RNR superfamily, catalyzes 3' maturation of chloroplast ribosomal RNAs in Arabidopsis thaliana.

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6 September 2017

Mutations in ClpC2/Hsp100 suppress the requirement for FtsH in thylakoid membrane biogenesis

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

PNPase activity determines the efficiency of mRNA 3'-end processing, the degradation of tRNA and the extent of polyadenylation in chloroplasts

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

Identification of a 350-kDa ClpP protease complex with 10 different Clp isoforms in chloroplasts of Arabidopsis thaliana.

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6 September 2017

A chloroplast processing enzyme functions as the general stromal processing peptidase

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6 September 2017

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6 September 2017

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6 September 2017

Measurement of protein using bicinchoninic acid

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6 September 2017

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14 September 2017

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Molecular chaperones and protein folding in plants

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26 June 2018

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3 September 2018

Identification of new protein substrates for the chloroplast ATP-dependent Clp protease supports its constitutive role in Arabidopsis

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3 September 2018

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3 September 2018

Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis

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3 September 2018

Protein disaggregation by the AAA+ chaperone ClpB involves partial threading of looped polypeptide segments.

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3 September 2018

A mutant impaired in the production of plastome-encoded proteins uncovers a mechanism for the homeostasis of isoprenoid biosynthetic enzymes in Arabidopsis plastids.

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3 September 2018

SsTypA1, a chloroplast-specific TypA/BipA-type GTPase from the halophytic plant Suaeda salsa, plays a role in oxidative stress tolerance.

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3 September 2018

The Arabidopsis thaliana type I Isopentenyl Diphosphate Isomerases are targeted to multiple subcellular compartments and have overlapping functions in isoprenoid biosynthesis

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3 September 2018

Support for a potential role of E. coli oligopeptidase A in protein degradation.

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3 September 2018

Formation of DEG5 and DEG8 complexes and their involvement in the degradation of photodamaged photosystem II reaction center D1 protein in Arabidopsis.

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3 September 2018

Consequences of membrane protein overexpression in Escherichia coli.

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3 September 2018

Further in vivo studies on the role of the molecular chaperone, Hsp93, in plastid protein import.

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3 September 2018

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3 September 2018

An Arabidopsis thaliana virescent mutant reveals a role for ClpR1 in plastid development.

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3 September 2018

An Arabidopsis chloroplast-targeted Hsp101 homologue, APG6, has an essential role in chloroplast development as well as heat-stress response.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

A nuclear-encoded ClpP subunit of the chloroplast ATP-dependent Clp protease is essential for early development in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Transcription analysis of arabidopsis membrane transporters and hormone pathways during developmental and induced leaf senescence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Catalysis, subcellular localization, expression and evolution of the targeting peptides degrading protease, AtPreP2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

In vivo studies on the roles of Tic110, Tic40 and Hsp93 during chloroplast protein import.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

EGY1 encodes a membrane-associated and ATP-independent metalloprotease that is required for chloroplast development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Ribosomal RNA processing and an RNase R family member in chloroplasts of Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Inactivation of the clpC1 gene encoding a chloroplast Hsp100 molecular chaperone causes growth retardation, leaf chlorosis, lower photosynthetic activity, and a specific reduction in photosystem content.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Chaperone activity of recombinant maize chloroplast protein synthesis elongation factor, EF-Tu.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Gene expression profiling of the tetrapyrrole metabolic pathway in Arabidopsis with a mini-array system.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

The plastid clpP1 protease gene is essential for plant development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

The chlorate-resistant and photomorphogenesis-defective mutant cr88 encodes a chloroplast-targeted HSP90.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

The VAR1 locus of Arabidopsis encodes a chloroplastic FtsH and is responsible for leaf variegation in the mutant alleles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Identification and characterization of SppA, a novel light-inducible chloroplast protease complex associated with thylakoid membranes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Heat-stress induced synthesis of chloroplast protein synthesis elongation factor (EF-Tu) in a heat-tolerant maize line

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Molecular cloning of geranyl diphosphate synthase and compartmentation of monoterpene synthesis in plant cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

Mutations in the Arabidopsis VAR2 locus cause leaf variegation due to the loss of a chloroplast FtsH protease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

3 September 2018

A secreted lipase of Fusarium graminearum is a virulence factor required for infection of cereals

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M900104-MCP200

21 January 2018

Function of ROC4 in the efficient repair of photodamaged photosystem II in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2722778

20 October 2018

Correlation of Relative Abundance Ratios Derived from Peptide Ion Chromatograms and Spectrum Counting for Quantitative Proteomic Analysis Using Stable Isotope Labeling

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M900104-MCP200

21 January 2018

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M900104-MCP200

21 January 2018

An Arabidopsis mutant defective in the plastid general protein import apparatus

1 reference

https://pubmed.ncbi.nlm.nih.gov/19423572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transport of proteins into chloroplasts. Partial purification of a thylakoidal processing peptidase involved in plastocyanin biogenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19423572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation of Chloroplast Proteins from Arabidopsis thaliana for Proteome Analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19423572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A stromal Hsp100 protein is required for normal chloroplast development and function in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19423572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The thylakoid lumen protease Deg1 is involved in the repair of photosystem II from photoinhibition in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19423572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for a role of ClpP in the degradation of the chloroplast cytochrome b(6)f complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/19423572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis nuclear DAL gene encodes a chloroplast protein which is required for the maturation of the plastid ribosomal RNAs and is essential for chloroplast differentiation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19423572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis tic110 is essential for the assembly and function of the protein import machinery of plastids.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19423572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis ClpB/Hsp100 family of proteins: chaperones for stress and chloroplast development

1 reference

https://pubmed.ncbi.nlm.nih.gov/19423572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural and functional insights into the chloroplast ATP-dependent Clp protease in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19423572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/MCP.M900104-MCP200

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19423572%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

release_nftnd434mbexbodhxjbj3x6e6i

1 reference

https://api.fatcat.wiki/v0/release/nftnd434mbexbodhxjbj3x6e6i

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19423572%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19423572%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

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