(Q37313037)

19 August 2017

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title

Design principles of biochemical oscillators (English)

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19 August 2017

2

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19 August 2017

Béla Novák

1

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19 August 2017

30 October 2008

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Nature Reviews Molecular Cell Biology

19 August 2017

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19 August 2017

9

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19 August 2017

12

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19 August 2017

981-991

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https://scigraph.springernature.com/pub.10.1038/nrm2530

19 August 2017

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cites work

A simple model of circadian rhythms based on dimerization and proteolysis of PER and TIM.

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Temporal organization of the cell cycle

6 September 2017

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Modeling the circadian clock: from molecular mechanism to physiological disorders.

6 September 2017

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Understanding NF-kappaB signaling via mathematical modeling

6 September 2017

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Ordered phosphorylation governs oscillation of a three-protein circadian clock

6 September 2017

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Substrate competition as a source of ultrasensitivity in the inactivation of Wee1.

6 September 2017

1 reference

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Post-translational modifications regulate the ticking of the circadian clock.

6 September 2017

1 reference

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Cell-signalling dynamics in time and space

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Multisite protein phosphorylation makes a good threshold but can be a poor switch

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

A plausible model for the digital response of p53 to DNA damage.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Systems-level dissection of the cell-cycle oscillator: bypassing positive feedback produces damped oscillations

6 September 2017

1 reference

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Chaos in an enzyme reaction.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Steady states and oscillations in the p53/Mdm2 network.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Oscillations in NF-kappaB signaling control the dynamics of gene expression

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

A CHEMICAL MECHANISM FOR OSCILLATION OF GLYCOLYTIC INTERMEDIATES IN YEAST CELLS

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Oscillatory nucleocytoplasmic shuttling of the general stress response transcriptional activators Msn2 and Msn4 in Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Computational approaches to cellular rhythms

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

The IkappaB-NF-kappaB signaling module: temporal control and selective gene activation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Regulation of the eukaryotic cell cycle: molecular antagonism, hysteresis, and irreversible transitions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Generation of oscillations by the p53-Mdm2 feedback loop: a theoretical and experimental study

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

A synthetic oscillatory network of transcriptional regulators

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Molecular bases for circadian clocks

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Modeling the control of DNA replication in fission yeast

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

An amplified sensitivity arising from covalent modification in biological systems

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Cell cycle dynamics of an M-phase-specific cytoplasmic factor in Xenopus laevis oocytes and eggs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Cyclin: a protein specified by maternal mRNA in sea urchin eggs that is destroyed at each cleavage division

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Sustained sinusoidal oscillations of reduced pyridine nucleotide in a cell-free extract of Saccharomyces carlsbergensis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Dissipative structures for an allosteric model. Application to glycolytic oscillations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Molecular model for receptor-stimulated calcium spiking

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Feedback of the Drosophila period gene product on circadian cycling of its messenger RNA levels

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Dynamics of the p53-Mdm2 feedback loop in individual cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Oscillatory phenomena in biochemistry

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

A Comparative Survey of the Function, Mechanism and Control of Cellular Oscillators

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Oscillation and Chaos in Physiological Control Systems

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Oscillatory kinetics of the peroxidase-oxidase reaction in an open system. Experimental and theoretical studies

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Control of cell-contact sites by cyclic AMP pulses in differentiating Dictyostelium cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Mechanism for oscillatory synthesis of cyclic AMP in Dictyostelium discoideum

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

A Model Based on Receptor Desensitization for Cyclic AMP Signaling in Dictyostelium Cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Robust, tunable biological oscillations from interlinked positive and negative feedback loops.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Exploring mechanisms of the DNA-damage response: p53 pulses and their possible relevance to apoptosis.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Mathematics of cellular control processes I. Negative feedback to one gene

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

A theory of biological pattern formation.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Chaos in abstract kinetics: two prototypes

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

A fast, robust and tunable synthetic gene oscillator.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Mathematical analysis of binary activation of a cell cycle kinase which down-regulates its own inhibitor.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Bifurcation analysis of a model of mitotic control in frog eggs

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

A model for circadian oscillations in the Drosophila period protein (PER).

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Oscillatory behavior in enzymatic control processes

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2796343

Pathological conditions resulting from instabilities in physiological control systems

2 September 2018

1 reference

Symmetry Breaking Instabilities in Biological Systems

21 January 2018

1 reference

An Entrainment Model for Timed Enzyme Syntheses in Bacteria

21 January 2018

1 reference

Repression and the Control of Cyclic Enzyme Synthesis in Bacillus subtilis

21 January 2018

1 reference

Multistability: a major means of differentiation and evolution in biological systems

21 January 2018

1 reference

A principle for chemical multivibration

31 March 2020

1 reference

Self-Oscillations in Glycolysis. 1. A Simple Kinetic Model

31 March 2020

1 reference

Nucleocytoplasmic oscillations of the yeast transcription factor Msn2: evidence for periodic PKA activation

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NRM2530

1 reference

19 August 2017

1 reference

PMC publication ID

2796343

19 August 2017

PubMed publication ID

18971947

1 reference

PMC publication ID

2796343