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English
Bioinformatic approaches to identifying orthologs and assessing evolutionary relationships.
scientific article published on 23 May 2009
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scholarly article
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stated in
Europe PubMed Central
PMCID
2732758
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19467333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
title
Bioinformatic approaches to identifying orthologs and assessing evolutionary relationships
(English)
1 reference
stated in
Europe PubMed Central
PMCID
2732758
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19467333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
main subject
bioinformatics
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inferred from title
author
Eric J Vallender
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
2732758
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19467333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
author name string
Eric J Vallender
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
2732758
retrieved
19 August 2017
publication date
23 May 2009
1 reference
stated in
Europe PubMed Central
PMCID
2732758
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19467333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
published in
Methods
1 reference
stated in
Europe PubMed Central
PMCID
2732758
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19467333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
volume
49
1 reference
stated in
Europe PubMed Central
PMCID
2732758
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19467333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
issue
1
1 reference
stated in
Europe PubMed Central
PMCID
2732758
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19467333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
page(s)
50-55
1 reference
stated in
Europe PubMed Central
PMCID
2732758
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19467333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
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6 September 2017
The UCSC Genome Browser Database: update 2009
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PubMed Central
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6 September 2017
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PubMed Central
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6 September 2017
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6 September 2017
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6 September 2017
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
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Comparative genomic analysis of human and chimpanzee indicates a key role for indels in primate evolution.
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6 September 2017
Should the draft chimpanzee sequence be finished?
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6 September 2017
Genome sequence, comparative analysis and haplotype structure of the domestic dog
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6 September 2017
Orthologs, paralogs, and evolutionary genomics
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732758
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6 September 2017
Initial sequence of the chimpanzee genome and comparison with the human genome
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6 September 2017
Finishing the euchromatic sequence of the human genome
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732758
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6 September 2017
MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences
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6 September 2017
Initial sequencing and comparative analysis of the mouse genome
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6 September 2017
Current methods of gene prediction, their strengths and weaknesses
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6 September 2017
PipMaker--a web server for aligning two genomic DNA sequences
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732758
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6 September 2017
Genomic cloning, structure, expression pattern, and chromosomal location of the human SIX3 gene.
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6 September 2017
Prediction of complete gene structures in human genomic DNA
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6 September 2017
Choosing BLAST options for better detection of orthologs as reciprocal best hits.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732758
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2 September 2018
Ortholog detection using the reciprocal smallest distance algorithm.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732758
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2 September 2018
OMA Browser--exploring orthologous relations across 352 complete genomes.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732758
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2 September 2018
Using multiple alignments to improve gene prediction.
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732758
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2 September 2018
Detecting putative orthologs.
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732758
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2 September 2018
Genomic divergence between human and chimpanzee estimated from large-scale alignments of genomic sequences.
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732758
retrieved
2 September 2018
The closest BLAST hit is often not the nearest neighbor.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732758
retrieved
2 September 2018
Six3, a murine homologue of the sine oculis gene, demarcates the most anterior border of the developing neural plate and is expressed during eye development.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732758
retrieved
2 September 2018
Forebrain and midbrain regions are deleted in Otx2-/- mutants due to a defective anterior neuroectoderm specification during gastrulation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732758
retrieved
2 September 2018
Identifiers
DOI
10.1016/J.YMETH.2009.05.010
1 reference
stated in
Europe PubMed Central
PMCID
2732758
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19467333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
PMCID
2732758
1 reference
stated in
Europe PubMed Central
PMCID
2732758
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19467333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
PubMed ID
19467333
1 reference
stated in
Europe PubMed Central
PMCID
2732758
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19467333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
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