(Q37351807)

19 August 2017

Ancestral population genomics: the coalescent hidden Markov model approach (English)

1 reference

19 August 2017

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1

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19 August 2017

3

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19 August 2017

4

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19 August 2017

Mikkel Heide Schierup

series ordinal

6

1 reference

19 August 2017

Ganesh Ganapathy

2

1 reference

19 August 2017

Marcy K Uyenoyama

series ordinal

5

1 reference

19 August 2017

language of work or name

English

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publication date

6 July 2009

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19 August 2017

16

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based on heuristic

inferred from page(s)

published in

Genetics

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19 August 2017

183

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19 August 2017

1

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19 August 2017

259-274

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Widespread genomic signatures of natural selection in hominid evolution

19 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Genetic evidence for complex speciation of humans and chimpanzees

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

CoaSim: a flexible environment for simulating genetic data under coalescent models

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

A fine-scale map of recombination rates and hotspots across the human genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Gene prediction with a hidden Markov model and a new intron submodel

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

A high-resolution recombination map of the human genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Generating samples under a Wright-Fisher neutral model of genetic variation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

A space-time process model for the evolution of DNA sequences.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Evolutionary trees from DNA sequences: A maximum likelihood approach

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

The use of sample genealogies for studying a selectively neutral m-loci model with recombination.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

A computational prediction of isochores based on hidden Markov models.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Using Evolutionary Trees in Protein Secondary Structure Prediction and Other Comparative Sequence Analyses

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746150

Gene trees and species trees are not the same

3 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19581452

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

TESTING THE CONSTANT-RATE NEUTRAL ALLELE MODEL WITH PROTEIN SEQUENCE DATA.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19581452

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1534/GENETICS.109.103010

1 reference

19 August 2017

1 reference

19 August 2017

PubMed publication ID

19581452

1 reference