(Q37371725)

English

Defining the structural origin of the substrate sequence independence of O-GlcNAcase using a combination of molecular docking and dynamics simulation.

scientific article published on 16 October 2013

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24134879%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Defining the structural origin of the substrate sequence independence of O-GlcNAcase using a combination of molecular docking and dynamics simulation (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24134879%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

2

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28 February 2020

author name string

Joanne C Martin

1

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28 February 2020

Keigo Ito

3

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28 February 2020

Robert J Woods

4

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28 February 2020

publication date

16 October 2013

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28 February 2020

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28 February 2020

24

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28 February 2020

1

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28 February 2020

85-96

1 reference

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PMC publication ID

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28 February 2020

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

1 reference

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Synergy of Peptide and Sugar in O-GlcNAcase Substrate Recognition

1 reference

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Insights into O-linked N-acetylglucosamine ([0-9]O-GlcNAc) processing and dynamics through kinetic analysis of O-GlcNAc transferase and O-GlcNAcase activity on protein substrates.

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading

1 reference

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Structural insight into the mechanism of streptozotocin inhibition of O-GlcNAcase

1 reference

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Elevation of Global O-GlcNAc Levels in 3T3-L1 Adipocytes by Selective Inhibition of O-GlcNAcase Does Not Induce Insulin Resistance

1 reference

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6 September 2017

Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations

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6 September 2017

Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data

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6 September 2017

Cycling of O-linked beta-N-acetylglucosamine on nucleocytoplasmic proteins

1 reference

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6 September 2017

Analysis of PUGNAc and NAG-thiazoline as transition state analogues for human O-GlcNAcase: mechanistic and structural insights into inhibitor selectivity and transition state poise

1 reference

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Modification of p53 with O-linked N-acetylglucosamine regulates p53 activity and stability

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Structure and mechanism of a bacterial beta-glucosaminidase having O-GlcNAcase activity

1 reference

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1 reference

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Identification of Asp174 and Asp175 as the key catalytic residues of human O-GlcNAcase by functional analysis of site-directed mutants

1 reference

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The Amber biomolecular simulation programs

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Glycan-dependent signaling: O-linked N-acetylglucosamine

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O-Glycosylation of nuclear and cytosolic proteins. Dynamic interplay between O-GlcNAc and O-phosphate

1 reference

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VMD: visual molecular dynamics

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1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Continuum solvent studies of the stability of RNA hairpin loops and helices

1 reference

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12 December 2020

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inferred from PubMed ID database lookup

Topography and polypeptide distribution of terminal N-acetylglucosamine residues on the surfaces of intact lymphocytes. Evidence for O-linked GlcNAc

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/GLYCOB/CWT094

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24134879%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

PMC publication ID

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24134879%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

PubMed publication ID

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Europe PubMed Central

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28 February 2020

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