(Q37389150)

20 August 2017

Stress-induced DNA duplex destabilization (SIDD) in the E. coli genome: SIDD sites are closely associated with promoters (English)

1 reference

20 August 2017

0 references

Huiquan Wang

1

1 reference

20 August 2017

Michiel Noordewier

series ordinal

2

1 reference

20 August 2017

Craig J Benham

series ordinal

3

1 reference

20 August 2017

language of work or name

1 reference

1 August 2004

1 reference

20 August 2017

1 reference

20 August 2017

14

1 reference

20 August 2017

8

1 reference

20 August 2017

1575-1584

1 reference

A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli

20 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

DNA topology-mediated control of global gene expression in Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

An initiation element in the yeast CUP1 promoter is recognized by RNA polymerase II in the absence of TATA box-binding protein if the DNA is negatively supercoiled

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

DNA topology and the thermal stress response, a tale from mesophiles and hyperthermophiles

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Operons in Escherichia coli: genomic analyses and predictions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

The complete genome sequence of Escherichia coli K-12

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory loci

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

A DNA unwinding element and an ARS consensus comprise a replication origin within a yeast chromosome.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Stable DNA unwinding, not "breathing," accounts for single-strand-specific nuclease hypersensitivity of specific A+T-rich sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication origin

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Helical repeat of DNA in solution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Torsional stress and local denaturation in supercoiled DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Loss of FBP function arrests cellular proliferation and extinguishes c-myc expression

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Early melting of supercoiled DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Escherichia coli promoter sequences: analysis and prediction

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Inhibition of DNA supercoiling-dependent transcriptional activation by a distant B-DNA to Z-DNA transition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

The analysis of stress-induced duplex destabilization in long genomic DNA sequences

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Promoter sequences and algorithmical methods for identifying them.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Activation of gene expression by a novel DNA structural transmission mechanism that requires supercoiling-induced DNA duplex destabilization in an upstream activating sequence

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Thermoregulation in Yersinia enterocolitica is coincident with changes in DNA supercoiling

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Unwound regions in yeast centromere IV DNA.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=509266

Escherichia coli response to hydrogen peroxide: a role for DNA supercoiling, topoisomerase I and Fis

2 September 2018

1 reference

12 December 2020

Unpaired structures in SCA10 (ATTCT)n.(AGAAT)n repeats

1 reference

12 December 2020

Genome-wide analysis of bacterial promoter regions

1 reference

12 December 2020

Theoretical analysis of competitive conformational transitions in torsionally stressed DNA

1 reference

12 December 2020

Localization of melted regions in supercoiled DNA

1 reference

12 December 2020

Energetics of the strand separation transition in superhelical DNA

1 reference

12 December 2020

Duplex destabilization in superhelical DNA is predicted to occur at specific transcriptional regulatory regions

1 reference

12 December 2020

Analysis of the structure of a natural alternating d(TA)n sequence in yeast chromatin

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.2080004

1 reference

release_y2oq5bwosvaqrhvtwamu24t2ei

20 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/y2oq5bwosvaqrhvtwamu24t2ei

24 November 2022

mapped directly with Wikidata item

1 reference

20 August 2017

1 reference