(Q37392521)

20 August 2017

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title

RNA polyadenylation and decay in mitochondria and chloroplasts (English)

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20 August 2017

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Gadi Schuster

1

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20 August 2017

David Stern

series ordinal

2

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20 August 2017

publication date

1 January 2009

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Progress in Molecular Biology and Translational Science

20 August 2017

published in

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20 August 2017

volume

85

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20 August 2017

page(s)

393-422

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Interspecific evolution: microbial symbiosis, endosymbiosis and gene transfer.

20 August 2017

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RNA-quality control by the exosome

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7 January 2021

The highways and byways of mRNA decay

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7 January 2021

Quality control of eukaryotic mRNA: safeguarding cells from abnormal mRNA function

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7 January 2021

Structure and function of poly(A) binding proteins

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7 January 2021

Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal

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7 January 2021

The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal.

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7 January 2021

Messenger RNA stability in mitochondria: different means to an end.

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7 January 2021

Functional overlap of tRNA nucleotidyltransferase, poly(A) polymerase I, and polynucleotide phosphorylase

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7 January 2021

Polyadenylylation destabilizes the rpsO mRNA of Escherichia coli

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7 January 2021

mRNA decay in prokaryotes and eukaryotes: different approaches to a similar problem

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7 January 2021

RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli

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7 January 2021

Addition of poly(A) and heteropolymeric 3' ends in Bacillus subtilis wild-type and polynucleotide phosphorylase-deficient strains

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7 January 2021

RNA polyadenylation and degradation in different Archaea; roles of the exosome and RNase R

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7 January 2021

RNA polyadenylation in Archaea: not observed in Haloferax while the exosome polynucleotidylates RNA in Sulfolobus

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7 January 2021

Mycoplasma gallisepticum as the first analyzed bacterium in which RNA is not polyadenylated

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7 January 2021

RNA Polyadenylation in Prokaryotes and Organelles; Different Tails Tell Different Tales

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7 January 2021

Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover.

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7 January 2021

The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme

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7 January 2021

Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli

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7 January 2021

Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB.

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7 January 2021

RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs

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7 January 2021

Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA.

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7 January 2021

RNase E cleaves at multiple sites in bubble regions of RNA I stem loops yielding products that dissociate differentially from the enzyme

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7 January 2021

RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors

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7 January 2021

Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli

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7 January 2021

A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12

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7 January 2021

Multiple degradation pathways of the rpsO mRNA of Escherichia coli. RNase E interacts with the 5' and 3' extremities of the primary transcript.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Autoregulation allows Escherichia coli RNase E to adjust continuously its synthesis to that of its substrates

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

A DEAD-box RNA helicase in the Escherichia coli RNA degradosome

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7 January 2021

Proteins associated with RNase E in a multicomponent ribonucleolytic complex

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7 January 2021

Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome

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7 January 2021

The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.

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7 January 2021

The endoribonucleolytic N-terminal half of Escherichia coli RNase E is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half, which is sufficient for degradosome assembly

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7 January 2021

RNase E: still a wonderfully mysterious enzyme.

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7 January 2021

RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E.

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7 January 2021

RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli

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7 January 2021

Ribonuclease E is a 5'-end-dependent endonuclease

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7 January 2021

Regions of RNase E important for 5'-end-dependent RNA cleavage and autoregulated synthesis

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7 January 2021

The CafA protein required for the 5'-maturation of 16 S rRNA is a 5'-end-dependent ribonuclease that has context-dependent broad sequence specificity.

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7 January 2021

Information available at cut rates: structure and mechanism of ribonucleases

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7 January 2021

A Streptomyces coelicolor functional orthologue of Escherichia coli RNase E shows shuffling of catalytic and PNPase-binding domains

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7 January 2021

Cooperation of endo- and exoribonucleases in chloroplast mRNA turnover

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7 January 2021

A 125 kDa RNase E/G-like protein is present in plastids and is essential for chloroplast development and autotrophic growth in Arabidopsis.

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7 January 2021

Chloroplast gene regulation: interaction of the nuclear and chloroplast genomes in the expression of photosynthetic proteins

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7 January 2021

Participation of nuclear genes in chloroplast gene expression

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7 January 2021

Post-Transcriptional Steps in the Expression of Chloroplast Genes

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7 January 2021

Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E.

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7 January 2021

Structural insights into the dual activity of RNase J

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7 January 2021

Processing of the Bacillus subtilis thrS leader mRNA is RNase E-dependent in Escherichia coli.

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7 January 2021

5'-to-3' exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA

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7 January 2021

In vivo evidence for 5'-->3' exoribonuclease degradation of an unstable chloroplast mRNA.

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7 January 2021

5' to 3' exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways

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7 January 2021

An mRNA 3' processing site targets downstream sequences for rapid degradation in Chlamydomonas chloroplasts

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7 January 2021

Maturation of the 5' end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1.

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7 January 2021

Spinach CSP41, an mRNA-binding protein and ribonuclease, is homologous to nucleotide-sugar epimerases and hydroxysteroid dehydrogenases

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7 January 2021

Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to th e70 S ribosome.

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7 January 2021

CSP41, a sequence-specific chloroplast mRNA binding protein, is an endoribonuclease

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7 January 2021

The spinach chloroplast endoribonuclease CSP41 cleaves the 3'-untranslated region of petD mRNA primarily within its terminal stem-loop structure

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7 January 2021

CSP41a, a multifunctional RNA-binding protein, initiates mRNA turnover in tobacco chloroplasts

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7 January 2021

Arabidopsis thaliana mutants reveal a role for CSP41a and CSP41b, two ribosome-associated endonucleases, in chloroplast ribosomal RNA metabolism

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7 January 2021

Control of plastid gene expression: 3' inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription.

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7 January 2021

Bacterial RNase P: a new view of an ancient enzyme

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7 January 2021

RNase P: variations and uses

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7 January 2021

Human RNase P: a tRNA-processing enzyme and transcription factor

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7 January 2021

Structure of ribonuclease P--a universal ribozyme.

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7 January 2021

RNase P: interface of the RNA and protein worlds

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7 January 2021

Ribonuclease P: the evolution of an ancient RNA enzyme

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7 January 2021

A big development for a small RNA

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7 January 2021

The RNase P associated with HeLa cell mitochondria contains an essential RNA component identical in sequence to that of the nuclear RNase P.

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7 January 2021

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

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7 January 2021

Characterization of human mitochondrial RNase P: novel aspects in tRNA processing

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Chloroplast ribonuclease P does not utilize the ribozyme-type pre-tRNA cleavage mechanism

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7 January 2021

This is the end: processing, editing and repair at the tRNA 3'-terminus

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7 January 2021

Assigning a function to a conserved group of proteins: the tRNA 3'-processing enzymes

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7 January 2021

Drosophila RNase Z processes mitochondrial and nuclear pre-tRNA 3' ends in vivo

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7 January 2021

Endonucleolytic processing of CCA-less tRNA precursors by RNase Z in Bacillus subtilis

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7 January 2021

Enzymatic synthesis of nucleic acidlike polynucleotides

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7 January 2021

Messenger RNA stability and its role in control of gene expression in bacteria and phages

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7 January 2021

Mutational analysis of polynucleotide phosphorylase from Escherichia coli.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Polynucleotide phosphorylase and the archaeal exosome as poly(A)-polymerases

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Polynucleotide phosphorylase is a global regulator of virulence and persistency in Salmonella enterica.

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7 January 2021

Plastid cues posttranscriptionally regulate the accumulation of key enzymes of the methylerythritol phosphate pathway in Arabidopsis.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Integration of chloroplast nucleic acid metabolism into the phosphate deprivation response in Chlamydomonas reinhardtii

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7 January 2021

Activation of double-stranded RNA dependent protein kinase, a new pathway by which human polynucleotide phosphorylase (hPNPase(old-35)) induces apoptosis.

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7 January 2021

Human polynucleotide phosphorylase reduces oxidative RNA damage and protects HeLa cell against oxidative stress

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Mammalian polynucleotide phosphorylase is an intermembrane space RNase that maintains mitochondrial homeostasis

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

A new function in translocation for the mitochondrial i-AAA protease Yme1: import of polynucleotide phosphorylase into the intermembrane space

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Stable PNPase RNAi silencing: its effect on the processing and adenylation of human mitochondrial RNA

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

PNPase activity determines the efficiency of mRNA 3'-end processing, the degradation of tRNA and the extent of polyadenylation in chloroplasts

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

AtmtPNPase is required for multiple aspects of the 18S rRNA metabolism in Arabidopsis thaliana mitochondria.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Two exoribonucleases act sequentially to process mature 3'-ends of atp9 mRNAs in Arabidopsis mitochondria

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Relaxed transcription in Arabidopsis mitochondria is counterbalanced by RNA stability control mediated by polyadenylation and polynucleotide phosphorylase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Analysis of the human polynucleotide phosphorylase (PNPase) reveals differences in RNA binding and response to phosphate compared to its bacterial and chloroplast counterparts

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Human polynucleotide phosphorylase: location matters

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

The archaeal exosome core is a hexameric ring structure with three catalytic subunits

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Running rings around RNA: a superfamily of phosphate-dependent RNases.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Domain analysis of the chloroplast polynucleotide phosphorylase reveals discrete functions in RNA degradation, polyadenylation, and sequence homology with exosome proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

A single subunit, Dis3, is essentially responsible for yeast exosome core activity

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Subunit architecture of multimeric complexes isolated directly from cells

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Reconstitution, activities, and structure of the eukaryotic RNA exosome

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

The PNPase, exosome and RNA helicases as the building components of evolutionarily-conserved RNA degradation machines

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Structure of the active subunit of the yeast exosome core, Rrp44: diverse modes of substrate recruitment in the RNase II nuclease family

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Exoribonuclease superfamilies: structural analysis and phylogenetic distribution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

RNR1, a 3'-5' exoribonuclease belonging to the RNR superfamily, catalyzes 3' maturation of chloroplast ribosomal RNAs in Arabidopsis thaliana.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Structural basis for processivity and single-strand specificity of RNase II.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

The yeast mitochondrial degradosome. Its composition, interplay between RNA helicase and RNase activities and the role in mitochondrial RNA metabolism

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Ribosomal RNA processing and an RNase R family member in chloroplasts of Arabidopsis.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

3' end mRNA processing: molecular mechanisms and implications for health and disease

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7 January 2021

RNA-specific ribonucleotidyl transferases

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7 January 2021

Determinants of substrate specificity in RNA-dependent nucleotidyl transferases

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Sequence motifs that distinguish ATP(CTP):tRNA nucleotidyl transferases from eubacterial poly(A) polymerases

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7 January 2021

Genome-based analysis of Chlamydomonas reinhardtii exoribonucleases and poly(A) polymerases predicts unexpected organellar and exosomal features

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

New ways to meet your (3') end oligouridylation as a step on the path to destruction

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Human Mitochondrial mRNAs Are Stabilized with Polyadenylation Regulated by Mitochondria-specific Poly(A) Polymerase and Polynucleotide Phosphorylase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Identification of a novel human nuclear-encoded mitochondrial poly(A) polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Polynucleotide phosphorylase functions as both an exonuclease and a poly(A) polymerase in spinach chloroplasts

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Addition of destabilizing poly (A)-rich sequences to endonuclease cleavage sites during the degradation of chloroplast mRNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Polyadenylation accelerates the degradation of the mitochondrial mRNA associated with cytoplasmic male sterility in sunflower.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Polyadenylation occurs at multiple sites in maize mitochondrial cox2 mRNA and is independent of editing status

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Transcript lifetime is balanced between stabilizing stem-loop structures and degradation-promoting polyadenylation in plant mitochondria

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Plant mitochondrial polyadenylated mRNAs are degraded by a 3'- to 5'-exoribonuclease activity, which proceeds unimpeded by stable secondary structures

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Transcription and RNA-processing in fission yeast mitochondria

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

The origin of polynucleotide phosphorylase domains

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Uridine insertion/deletion RNA editing in trypanosome mitochondria: a complex business

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Opposing effects of polyadenylation on the stability of edited and unedited mitochondrial RNAs in Trypanosoma brucei

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Polyadenylation and degradation of human mitochondrial RNA: the prokaryotic past leaves its mark

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

3' adenylation determines mRNA abundance and monitors completion of RNA editing in T. brucei mitochondria

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

A new yeast poly(A) polymerase complex involved in RNA quality control

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

TbDSS-1, an essential Trypanosoma brucei exoribonuclease homolog that has pleiotropic effects on mitochondrial RNA metabolism

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Polyadenylation regulates the stability of Trypanosoma brucei mitochondrial RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

UTP-dependent turnover of Trypanosoma brucei mitochondrial mRNA requires UTP polymerization and involves the RET1 TUTase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

The mitochondrial genome: structure, transcription, translation and replication

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Biogenesis of mitochondria

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Sequence and organization of the human mitochondrial genome

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

tRNA punctuation model of RNA processing in human mitochondria

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Distinctive features of the 5'-terminal sequences of the human mitochondrial mRNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

The pattern of transcription of the human mitochondrial rRNA genes reveals two overlapping transcription units

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Mitochondrial tRNA 3' end metabolism and human disease.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Mitochondrial polyadenylic acid-containing RNA: localization and characterization.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Fractionation of mitochondrial RNA from HeLa cells by high-resolution electrophoresis under strongly denaturing conditions

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Investigation of a pathogenic mtDNA microdeletion reveals a translation-dependent deadenylation decay pathway in human mitochondria

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Polyadenylation and degradation of mRNA in mammalian mitochondria: a missing link?

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

Human polynucleotide phosphorylase, hPNPase, is localized in mitochondria.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900810-6

7 January 2021

10.1016/S0079-6603(08)00810-6

Identifiers

DOI

1 reference

20 August 2017

1 reference