(Q37417063)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24097436%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

title

Cotranscriptional recruitment of yeast TRAMP complex to intronic sequences promotes optimal pre-mRNA splicing (English)

1 reference

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27 February 2020

7

1 reference

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27 February 2020

Chi-Ming Wong

8

1 reference

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27 February 2020

author name string

Ka-Yiu Edwin Kong

1

1 reference

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27 February 2020

Hei-Man Vincent Tang

2

1 reference

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27 February 2020

Kewu Pan

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24097436%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Zhe Huang

4

1 reference

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27 February 2020

Tsz-Hang Jimmy Lee

5

1 reference

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27 February 2020

Alan G Hinnebusch

6

1 reference

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27 February 2020

language of work or name

English

0 references

publication date

3 October 2013

1 reference

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27 February 2020

published in

Nucleic Acids Research

1 reference

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27 February 2020

volume

42

1 reference

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27 February 2020

issue

1

1 reference

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27 February 2020

page(s)

643-660

1 reference

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describes a project that uses

27 February 2020

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3874199/fullTextXML

inferred from PubMed Central ID database lookup

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Air1 zinc knuckles 4 and 5 and a conserved IWRXY motif are critical for the function and integrity of the Trf4/5-Air1/2-Mtr4 polyadenylation (TRAMP) RNA quality control complex

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The multifunctional Ccr4-Not complex directly promotes transcription elongation

6 September 2017

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Dynamic histone acetylation is critical for cotranscriptional spliceosome assembly and spliceosomal rearrangements

6 September 2017

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Leo1 Subunit of the Yeast Paf1 Complex Binds RNA and Contributes to Complex Recruitment*

6 September 2017

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6 September 2017

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Yeast arginine methyltransferase Hmt1p regulates transcription elongation and termination by methylating Npl3p

6 September 2017

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TRAMP complex enhances RNA degradation by the nuclear exosome component Rrp6

6 September 2017

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"Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions

6 September 2017

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Loss of yeast peroxiredoxin Tsa1p induces genome instability through activation of the DNA damage checkpoint and elevation of dNTP levels

6 September 2017

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Nonsense-mediated mRNA decay mutes the splicing defects of spliceosome component mutations

6 September 2017

1 reference

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Acetylation by the transcriptional coactivator Gcn5 plays a novel role in co-transcriptional spliceosome assembly

6 September 2017

1 reference

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The CCR4-NOT complex physically and functionally interacts with TRAMP and the nuclear exosome

6 September 2017

1 reference

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Distinct roles of non-canonical poly(A) polymerases in RNA metabolism

6 September 2017

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The exosome associates cotranscriptionally with the nascent pre-mRNP through interactions with heterogeneous nuclear ribonucleoproteins

6 September 2017

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6 September 2017

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The spliceosome: design principles of a dynamic RNP machine

6 September 2017

1 reference

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Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

6 September 2017

1 reference

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Bidirectional promoters generate pervasive transcription in yeast

6 September 2017

1 reference

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The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome

6 September 2017

1 reference

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Endonucleolytic RNA cleavage by a eukaryotic exosome

6 September 2017

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Unphosphorylated SR-like protein Npl3 stimulates RNA polymerase II elongation

6 September 2017

1 reference

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The exosome: a multipurpose RNA-decay machine

6 September 2017

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6 September 2017

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Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control

6 September 2017

1 reference

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Yeast cap binding complex impedes recruitment of cleavage factor IA to weak termination sites.

6 September 2017

1 reference

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Rad4-Rad23 interaction with SWI/SNF links ATP-dependent chromatin remodeling with nucleotide excision repair

6 September 2017

1 reference

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In vivo commitment to yeast cotranscriptional splicing is sensitive to transcription elongation mutants

6 September 2017

1 reference

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Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae

6 September 2017

1 reference

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Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA.

6 September 2017

1 reference

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Yeast Trf5p is a nuclear poly(A) polymerase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Contributions of Trf4p- and Trf5p-dependent polyadenylation to the processing and degradative functions of the yeast nuclear exosome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

A nuclear degradation pathway controls the abundance of normal mRNAs in Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

A new yeast poly(A) polymerase complex involved in RNA quality control

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Interaction between transcription elongation factors and mRNA 3'-end formation at the Saccharomyces cerevisiae GAL10-GAL7 locus.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Genome-wide mRNA surveillance is coupled to mRNA export

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Multiple links between transcription and splicing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Nuclear retention of unspliced mRNAs in yeast is mediated by perinuclear Mlp1.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Degradation of normal mRNA in the nucleus of Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Identification of a regulated pathway for nuclear pre-mRNA turnover.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Novel RING finger proteins, Air1p and Air2p, interact with Hmt1p and inhibit the arginine methylation of Npl3p.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Functions of the exosome in rRNA, snoRNA and snRNA synthesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

In vivo commitment to splicing in yeast involves the nucleotide upstream from the branch site conserved sequence and the Mud2 protein

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

A nuclear cap binding protein complex involved in pre-mRNA splicing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Interactions between the amino-terminal domain of p56lck and cytoplasmic domains of CD4 and CD8 alpha in yeast

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

A dual role for BBP/ScSF1 in nuclear pre-mRNA retention and splicing

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Severe growth defect in a Schizosaccharomyces pombe mutant defective in intron lariat degradation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Biochemical analysis of TREX complex recruitment to intronless and intron-containing yeast genes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Interaction profiling identifies the human nuclear exosome targeting complex

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

The THO complex cooperates with the nuclear RNA surveillance machinery to control small nucleolar RNA expression.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Rrp6 is recruited to transcribed genes and accompanies the spliced mRNA to the nuclear pore

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Widespread impact of nonsense-mediated mRNA decay on the yeast intronome

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Transcriptome-wide analysis of exosome targets

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

A vector system for efficient and economical switching of C-terminal epitope tags in Saccharomyces cerevisiae.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Cytoplasmic degradation of splice-defective pre-mRNAs and intermediates

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874199

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

2 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKT888

Some cis- and trans-acting mutants for splicing target pre-mRNA to the cytoplasm

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24097436

12 December 2020

inferred from PubMed ID database lookup

A simple in vivo assay for measuring the efficiency of gene length-dependent processes in yeast mRNA biogenesis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24097436

12 December 2020

inferred from PubMed ID database lookup

A Pre-mRNA degradation pathway that selectively targets intron-containing genes requires the nuclear poly(A)-binding protein

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24097436

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKT888

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24097436%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24097436%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

PubMed publication ID

24097436

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24097436%20AND%20SRC:MED&resulttype=core&format=json