(Q37688895)

22 August 2017

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title

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression (English)

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22 August 2017

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Shane C Dillon

1

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22 August 2017

Charles J Dorman

series ordinal

2

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22 August 2017

language of work or name

English

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publication date

8 February 2010

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Nature Reviews Microbiology

22 August 2017

published in

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22 August 2017

volume

8

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22 August 2017

issue

3

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22 August 2017

page(s)

185-195

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Regulation of gene expression by histone-like proteins in bacteria.

22 August 2017

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Crystal structure and functional analysis of an archaeal chromatin protein Alba from the hyperthermophilic archaeon Pyrococcus horikoshii OT3

31 March 2020

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Structural basis for H-NS-mediated trapping of RNA polymerase in the open initiation complex at the rrnB P1.

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Anti-silencing: overcoming H-NS-mediated repression of transcription in Gram-negative enteric bacteria

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Lsr2 of Mycobacterium represents a novel class of H-NS-like proteins

31 March 2020

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Vibrio cholerae H‐NS domain structure and function with respect to transcriptional repression of ToxR regulon genes reveals differences among H‐NS family members

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Btcd, a mouse protein that binds to curved DNA, can substitute in Escherichia coli for H-NS, a bacterial nucleoid protein.

31 March 2020

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Expression and mutational analysis of the nucleoid-associated protein H-NS of Salmonella typhimurium.

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Escherichia coli protein analogs StpA and H-NS: regulatory loops, similar and disparate effects on nucleic acid dynamics

31 March 2020

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A systematic in vitro study of nucleoprotein complexes formed by bacterial nucleoid-associated proteins revealing novel types of DNA organization.

31 March 2020

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A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli

31 March 2020

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RNA chaperone activity and RNA-binding properties of the E. coli protein StpA.

31 March 2020

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H-NS: a universal regulator for a dynamic genome

31 March 2020

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The novel Hha/YmoA family of nucleoid-associated proteins: use of structural mimicry to modulate the activity of the H-NS family of proteins

31 March 2020

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Variation in HU composition during growth of Escherichia coli: the heterodimer is required for long term survival

31 March 2020

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Solution structure of the HU protein from Bacillus stearothermophilus

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

Mycobacterium smegmatishistone-like protein Hlp is nucleoid associated

31 March 2020

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HU protein of Escherichia coli binds specifically to DNA that contains single-strand breaks or gaps

31 March 2020

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Interaction of the Escherichia coli HU protein with DNA. Evidence for formation of nucleosome-like structures with altered DNA helical pitch

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

The HU regulon is composed of genes responding to anaerobiosis, acid stress, high osmolarity and SOS induction

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

Spiral structure of Escherichia coli HU provides foundation for DNA supercoiling

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

Viewing single lambda site-specific recombination events from start to finish

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

IHF and HU: flexible architects of bent DNA.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

The integration host factor (IHF) integrates stationary-phase and virulence gene expression in Salmonella enterica serovar Typhimurium.

31 March 2020

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Global gene expression profiling in Escherichia coli K12. The effects of integration host factor

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

Recruitment of σ54-RNA Polymerase to thePuPromoter ofPseudomonas putidathrough Integration Host Factor-mediated Positioning Switch of α Subunit Carboxyl-terminal Domain on an UP-like Element

31 March 2020

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Role of integration host factor in stimulating transcription from the sigma 54-dependent nifH promoter

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

Activation of gene expression by a novel DNA structural transmission mechanism that requires supercoiling-induced DNA duplex destabilization in an upstream activating sequence

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory loci

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

FIS activates sequential steps during transcription initiation at a stable RNA promoter

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

Building a bacterial orisome: emergence of new regulatory features for replication origin unwinding

31 March 2020

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Initiator titration complex formed at datA with the aid of IHF regulates replication timing in Escherichia coli.

31 March 2020

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Transpososome dynamics and regulation in Tn10 transposition

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

The new gene mukB codes for a 177 kd protein with coiled-coil domains involved in chromosome partitioning of E. coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Suppression of chromosome segregation defects of Escherichia coli muk mutants by mutations in topoisomerase I.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2261

DNA reshaping by MukB. Right-handed knotting, left-handed supercoiling

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Escherichia coli cell cycle control genes affect chromosome superhelicity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Distribution of gyrase and topoisomerase IV on bacterial nucleoid: implications for nucleoid organization

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

A consensus sequence for binding of Lrp to DNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Lrp, a major regulatory protein in Escherichia coli, bends DNA and can organize the assembly of a higher-order nucleoprotein structure.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Leucine-induced dissociation of Escherichia coli Lrp hexadecamers to octamers

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Crystal structure of the Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Structure of the Escherichia coli leucine-responsive regulatory protein Lrp reveals a novel octameric assembly

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

The leucine-responsive regulatory protein, Lrp, activates transcription of the fim operon in Salmonella enterica serovar typhimurium via the fimZ regulatory gene.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Contribution of DNA conformation and topology in right-handed DNA wrapping by the Bacillus subtilis LrpC protein

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Bacillus subtilis LrpC is a sequence-independent DNA-binding and DNA-bending protein which bridges DNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

The role of LRP and H-NS in transcription regulation: involvement of synergism, allostery and macromolecular crowding.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Effects of nutrition and growth rate on Lrp levels in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Effects of Fis on Escherichia coli gene expression during different growth stages.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Nucleoid-associated proteins and bacterial physiology.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Selective repression by Fis and H-NS at the Escherichia coli dps promoter.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

The C-terminal domains of the RNA polymerase alpha subunits: contact site with Fis and localization during co-activation with CRP at the Escherichia coli proP P2 promoter.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Mechanism of transcriptional activation by FIS: role of core promoter structure and DNA topology.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Control of rRNA synthesis in Escherichia coli: a systems biology approach

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Differential regulation of Escherichia coli topoisomerase I by Fis.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Buffering of stable RNA promoter activity against DNA relaxation requires a far upstream sequence.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Fis regulates transcriptional induction of RpoS in Salmonella enterica

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Expression of the Fis protein is sustained in late-exponential- and stationary-phase cultures of Salmonella enterica serovar Typhimurium grown in the absence of aeration.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Complex regulation of the DnaJ homolog CbpA by the global regulators sigmaS and Lrp, by the specific inhibitor CbpM, and by the proteolytic degradation of CbpM.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Borrelia burgdorferi EbfC defines a newly-identified, widespread family of bacterial DNA-binding proteins.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

The small RNA regulators of Escherichia coli: roles and mechanisms*

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Three-way interactions among the Sfh, StpA and H-NS nucleoid-structuring proteins of Shigella flexneri 2a strain 2457T

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Antagonistic involvement of FIS and H-NS proteins in the transcriptional control of hns expression.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Autoregulated expression of the gene coding for the leucine-responsive protein, Lrp, a global regulator in Salmonella enterica serovar Typhimurium.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

The Escherichia coli stpA gene is transiently expressed during growth in rich medium and is induced in minimal medium and by stress conditions.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

The regulation of bacterial transcription initiation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

The GATC-binding protein SeqA is required for bile resistance and virulence in Salmonella enterica serovar typhimurium

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Coupling of Escherichia coli hns mRNA levels to DNA synthesis by autoregulation: implications for growth phase control

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Reciprocal transcriptional and posttranscriptional growth-phase-dependent expression of sfh, a gene that encodes a paralogue of the nucleoid-associated protein H-NS.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

DNA-protein interactions and bacterial chromosome architecture

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

DNA supercoiling and bacterial gene expression.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

The PredictProtein server

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

The structure of DNA in the nucleosome core

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Position and orientation of the globular domain of linker histone H5 on the nucleosome.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

A Topological Interaction between Cohesin Rings and a Circular Minichromosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Crystal structures of recombinant histones HMfA and HMfB from the hyperthermophilic archaeon Methanothermus fervidus

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

DNA bending induced by the archaebacterial histone-like protein MC1.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

The HU protein from Thermotoga maritima: recombinant expression, purification and physicochemical characterization of an extremely hyperthermophilic DNA-binding protein

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Cell cycle-dependent expression of an essential SMC-like protein and dynamic chromosome localization in the archaeon Halobacterium salinarum

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Ss-LrpB from Sulfolobus solfataricus condenses about 100 base pairs of its own operator DNA into globular nucleoprotein complexes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Biochemical and structural characterization of Cren7, a novel chromatin protein conserved among Crenarchaea

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

The hyperthermophile chromosomal protein Sac7d sharply kinks DNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Characterization of Sac10a, a hyperthermophile DNA-binding protein from Sulfolobus acidocaldarius.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

CC1, a novel crenarchaeal DNA binding protein

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Characterization of the binding of HU and IHF, homologous histone-like proteins of Escherichia coli, to curved and uncurved DNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Characterization of a prokaryotic SMC protein involved in chromosome partitioning

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

Bacterial nucleoid dynamics: oxidative stress response in Staphylococcus aureus.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2261

A DNA structural atlas for Escherichia coli

31 March 2020

1 reference

12 December 2020

Histonelike proteins of bacteria

1 reference

12 December 2020

Characterization of Lrp, and Escherichia coli regulatory protein that mediates a global response to leucine

1 reference

12 December 2020

The Pfam protein families database

1 reference

12 December 2020

Growth phase-dependent regulation and stringent control of fis are conserved processes in enteric bacteria and involve a single promoter (fis P) in Escherichia coli

1 reference

12 December 2020

Role of histone-like proteins H-NS and StpA in expression of virulence determinants of uropathogenic Escherichia coli

1 reference

12 December 2020

The cyclic AMP receptor protein modulates quorum sensing, motility and multiple genes that affect intestinal colonization in Vibrio cholerae

1 reference

12 December 2020

The complete phosphotransferase system in Escherichia coli

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12 December 2020

A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli

1 reference

12 December 2020

Opposed actions of regulatory proteins, DnaA and IciA, in opening the replication origin of Escherichia coli

1 reference

12 December 2020

A divalent switch drives H-NS/DNA-binding conformations between stiffening and bridging modes.

1 reference

12 December 2020

SeqA: a negative modulator of replication initiation in E. coli

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRMICRO2261

1 reference

Dimensions Publication ID

22 August 2017

1045491167

0 references

1 reference