(Q37812408)

23 August 2017

Cyanine dyes in biophysical research: the photophysics of polymethine fluorescent dyes in biomolecular environments (English)

1 reference

23 August 2017

1 reference

Marcia Levitus

1

1 reference

PubMed ID

21108866

23 August 2017

Suman Ranjit

series ordinal

2

1 reference

23 August 2017

26 November 2010

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Quarterly Reviews of Biophysics

23 August 2017

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23 August 2017

44

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23 August 2017

1

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23 August 2017

123-151

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Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids

23 August 2017

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Spectral identification of specific photophysics of cy5 by means of ensemble and single molecule measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Dil and diO: versatile fluorescent dyes for neuronal labelling and pathway tracing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Conformational flexibility of four-way junctions in RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

TOTO and YOYO: new very bright fluorochromes for DNA content analyses by flow cytometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Carbocyanine dyes as efficient reversible single-molecule optical switch

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Nucleobase-specific enhancement of Cy3 fluorescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Single-molecule fluorescence resonance energy transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Monitoring the conformational fluctuations of DNA hairpins using single-pair fluorescence resonance energy transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Anomalously slow mobility of fluorescent lipid probes in the plasma membrane of the yeast Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Rigid cyanine dye nucleic acid labels

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Cyanine dye labeling reagents for sulfhydryl groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Proton-powered subunit rotation in single membrane-bound F0F1-ATP synthase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Photoswitching mechanism of cyanine dyes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Mitigating unwanted photophysical processes for improved single-molecule fluorescence imaging

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

The orientational freedom of molecular probes. The orientation factor in intramolecular energy transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Visualizing the splicing of single pre-mRNA molecules in whole cell extract

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Single-molecule redox blinking of perylene diimide derivatives in water

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

On the mechanism of Trolox as antiblinking and antibleaching reagent

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Cy3-Cy5 covalent heterodimers for single-molecule photoswitching

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Mechanisms of quenching of Alexa fluorophores by natural amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Direct and sensitized photooxidation of cyanine dyes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Spectroscopic study and evaluation of red-absorbing fluorescent dyes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Spectra and fluorescence lifetimes of lissamine rhodamine, tetramethylrhodamine isothiocyanate, texas red, and cyanine 3.18 fluorophores: influences of some environmental factors recorded with a confocal laser scanning microscope

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

A brief survey of methods for preparing protein conjugates with dyes, haptens, and cross-linking reagents

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

tRNA selection and kinetic proofreading in translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Multicolor super-resolution imaging with photo-switchable fluorescent probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Short-Range Spectroscopic Ruler Based on a Single-Molecule Optical Switch

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Microspectroscopic imaging tracks the intracellular processing of a signal transduction protein: fluorescent-labeled protein kinase C beta I

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Correlating structural dynamics and function in single ribozyme molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

A Single-Molecule Study of RNA Catalysis and Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

RNA folding dynamics by single-molecule fluorescence resonance energy transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

The ATP-waiting conformation of rotating F1-ATPase revealed by single-pair fluorescence resonance energy transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Lateral diffusion in phospholipid multibilayers measured by fluorescence recovery after photobleaching

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Strategies to improve photostabilities in ultrasensitive fluorescence spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Characterization of a Single Molecule DNA Switch in Free Solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Optical probes of membrane potential

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Single-molecule photophysics of oxazines on DNA and its application in a FRET switch

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

A Reducing and Oxidizing System Minimizes Photobleaching and Blinking of Fluorescent Dyes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Kappa-squared: from nuisance to new sense

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Fluorescence-quenching phenomenon by photoinduced electron transfer between a fluorescent dye and a nucleotide base.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Fast, long-range, reversible conformational fluctuations in nucleosomes revealed by single-pair fluorescence resonance energy transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Cyanine dye labeling reagents: sulfoindocyanine succinimidyl esters

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Effects of fluorescent dyes, quenchers, and dangling ends on DNA duplex stability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Cyanines during the 1990s: A Review

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Single-molecule observations of neck linker conformational changes in the kinesin motor protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Tracking spatial disorder in an optical ruler by time-resolved NSET.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Studies on the mechanism by which cyanine dyes measure membrane potential in red blood cells and phosphatidylcholine vesicles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Inter- and intramolecular fluorescence quenching of organic dyes by tryptophan

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Effects of metallic silver island films on resonance energy transfer between N,N'-(dipropyl)-tetramethyl- indocarbocyanine (Cy3)- and N,N'-(dipropyl)-tetramethyl- indodicarbocyanine (Cy5)-labeled DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Structure property analysis of pentamethine indocyanine dyes: identification of a new dye for life science applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Single-molecule and ensemble fluorescence assays for a functionally important conformational change in T7 DNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Single-pair FRET microscopy reveals mononucleosome dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Nile red as a polarity-sensitive fluorescent probe of hydrophobic protein surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Using fluorescence resonance energy transfer to measure distances along individual DNA molecules: corrections due to nonideal transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Long time scale blinking kinetics of cyanine fluorophores conjugated to DNA and its effect on Förster resonance energy transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

DiOC6 staining reveals organelle structure and dynamics in living yeast cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Stable fluorescent complexes of double-stranded DNA with bis-intercalating asymmetric cyanine dyes: properties and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Fluctuations of transfer RNAs between classical and hybrid states

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Alternating-laser excitation of single molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Advances in single-molecule fluorescence methods for molecular biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

A practical guide to single-molecule FRET

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Improved photostability and fluorescence properties through polyfluorination of a cyanine dye.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

DNA-binding orientation and domain conformation of the E. coli rep helicase monomer bound to a partial duplex junction: single-molecule studies of fluorescently labeled enzymes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Photophysics of backbone fluorescent DNA modifications: reducing uncertainties in FRET.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Characterization of photoinduced isomerization and intersystem crossing of the cyanine dye Cy3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Spectral Absorption and Fluorescence of Dyes in the Molecular State

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

Optical assay for glucose based on the luminescnence decay time of the long wavelength dye Cy5™

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Cyanine dye labeling reagents--carboxymethylindocyanine succinimidyl esters

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

New donor-acceptor pair for fluorescent immunoassays by energy transfer

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Nonblinking and long-lasting single-molecule fluorescence imaging

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Fluorescence resonance energy transfer (FRET) for DNA biosensors: FRET pairs and Förster distances for various dye-DNA conjugates

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Localization of endoplasmic reticulum in living and glutaraldehyde-fixed cells with fluorescent dyes

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Development of an spFRET method to measure structure changes in ion exchange proteins

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Parameters Influencing the On- and Off-Times in the Fluorescence Intensity Traces of Single Cyanine Dye Molecules

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Photoinduced Electron Transfer between Fluorescent Dyes and Guanosine Residues in DNA-Hairpins

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Mechanochemical coupling in actomyosin energy transduction studied by in vitro movement assay

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

DNA-templated assembly of helical cyanine dye aggregates: a supramolecular chain polymerization

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

DNA sequence-dependent enhancement of Cy3 fluorescence

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Anomalous fluorescence enhancement of Cy3 and cy3.5 versus anomalous fluorescence loss of Cy5 and Cy7 upon covalent linking to IgG and noncovalent binding to avidin

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Carbocyanine dyes. Novel markers for labelling neurons

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Cyanine Dye–DNA Interactions: Intercalation, Groove Binding, and Aggregation

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Binding of symmetrical cyanine dyes into the DNA minor groove

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Photoswitches: Key molecules for subdiffraction-resolution fluorescence imaging and molecular quantification

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Single-molecule studies of DNA and RNA four-way junctions

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Quantitative estimation of protein binding site polarity. Fluorescence of N-arylaminonaphthalenesulfonates

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Biochemistry without oxygen

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

The use of protocatechuate dioxygenase for maintaining anaerobic conditions in biochemical experiments

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Calorimetric, photometric and lifetime determinations of fluorescence yields of fluorescein dyes

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Location of cyanine-3 on double-stranded DNA: importance for fluorescence resonance energy transfer studies

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

The structure of cyanine 5 terminally attached to double-stranded DNA: implications for FRET studies

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Enzymatic removal of oxygen for polarography and related methods

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Cy3B: improving the performance of cyanine dyes

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

Fluorescence Properties and Photophysics of the Sulfoindocyanine Cy3 Linked Covalently to DNA

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000247

7 January 2021

10.1017/S0033583510000247

Identifiers

DOI

1 reference

23 August 2017

1 reference

PubMed ID

21108866