(Q37876360)

English

Fluorescence spectroscopy and molecular dynamics simulations in studies on the mechanism of membrane destabilization by antimicrobial peptides.

scientific article published on 17 May 2011

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scholarly article

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1 February 2020

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Europe PubMed Central

Fluorescence spectroscopy and molecular dynamics simulations in studies on the mechanism of membrane destabilization by antimicrobial peptides (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21584808%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

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fluorescence spectroscopy

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antimicrobial peptide

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based on heuristic

inferred from title

Gianfranco Bocchinfuso

1

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Europe PubMed Central

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1 February 2020

Claudia Mazzuca

3

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1 February 2020

5

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1 February 2020

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Sara Bobone

2

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1 February 2020

Antonio Palleschi

4

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publication date

17 May 2011

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Cellular and Molecular Life Sciences

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1 February 2020

68

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13

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1 February 2020

2281-2301

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1 February 2020

https://scigraph.springernature.com/pub.10.1007/s00018-011-0719-1

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All-D amino acid-containing channel-forming antibiotic peptides

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Channel-forming properties of cecropins and related model compounds incorporated into planar lipid membranes

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Antimicrobial peptides: linking partition, activity and high membrane-bound concentrations.

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Describing the mechanism of antimicrobial peptide action with the interfacial activity model

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Membrane excitation through voltage-induced aggregation of channel precursors

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Structure of the alamethicin pore reconstructed by x-ray diffraction analysis

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Orientational and aggregational states of magainin 2 in phospholipid bilayers.

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Membrane pores induced by magainin

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Toroidal pores formed by antimicrobial peptides show significant disorder.

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Detergent-like actions of linear amphipathic cationic antimicrobial peptides

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Membrane perturbation by the antimicrobial peptide PMAP-23: a fluorescence and molecular dynamics study

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How lipids influence the mode of action of membrane-active peptides.

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Structure, topology, and dynamics of membrane peptides and proteins from solid-state NMR spectroscopy

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Determining membrane protein structures: still a challenge!

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Different mechanisms of action of antimicrobial peptides: insights from fluorescence spectroscopy experiments and molecular dynamics simulations.

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Pore-forming protein structure analysis in membranes using multiple independent fluorescence techniques.

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Fluorescence as a method to reveal structures and membrane-interactions of amyloidogenic proteins

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Use of fluorescent probes to monitor molecular order and motions within liposome bilayers

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Investigation on lipid asymmetry using lipid probes: Comparison between spin-labeled lipids and fluorescent lipids

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Quantifying molecular partition into model systems of biomembranes: an emphasis on optical spectroscopic methods.

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21 January 2018

How to address CPP and AMP translocation? Methods to detect and quantify peptide internalization in vitro and in vivo (Review).

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21 January 2018

Forster resonance energy transfer measurements of transmembrane helix dimerization energetics

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21 January 2018

FRET analysis of domain formation and properties in complex membrane systems

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21 January 2018

Quantitative assessment of peptide-lipid interactions. Ubiquitous fluorescence methodologies.

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21 January 2018

To see or not to see: lateral organization of biological membranes and fluorescence microscopy

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21 January 2018

Membrane microheterogeneity: Förster resonance energy transfer characterization of lateral membrane domains

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21 January 2018

Simulation studies of the interaction of antimicrobial peptides and lipid bilayers

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21 January 2018

Potassium channels: structures, models, simulations.

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21 January 2018

Computer simulation of antimicrobial peptides

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21 January 2018

Coarse-grained modeling of lipids

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21 January 2018

Lipids on the move: simulations of membrane pores, domains, stalks and curves

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21 January 2018

Defect-mediated trafficking across cell membranes: insights from in silico modeling

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21 January 2018

Lipid diffusion in planar membranes investigated by fluorescence correlation spectroscopy

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21 January 2018

Recent applications of fluorescence recovery after photobleaching (FRAP) to membrane bio-macromolecules.

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21 January 2018

Fluorescence anisotropy and resonance energy transfer: powerful tools for measuring real time protein dynamics in a physiological environment

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21 January 2018

Conformational dynamics of bovine Cu, Zn superoxide dismutase revealed by time-resolved fluorescence spectroscopy of the single tyrosine residue

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21 January 2018

Structural features of model glycopeptides in solution and in membrane phase: a spectroscopic and molecular mechanics investigation.

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21 January 2018

Aggregation and water-membrane partition as major determinants of the activity of the antibiotic peptide trichogin GA IV.

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21 January 2018

CD spectroscopy of peptides and proteins bound to large unilamellar vesicles

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21 January 2018

Giant unilamellar vesicle electroformation from lipid mixtures to native membranes under physiological conditions.

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21 January 2018

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Interpretation of 2H-NMR experiments on the orientation of the transmembrane helix WALP23 by computer simulations.

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Membrane/Toxin Interaction Energetics via Serial Multiscale Molecular Dynamics Simulations.

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Alternative mechanisms for the interaction of the cell-penetrating peptides penetratin and the TAT peptide with lipid bilayers

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Coarse-grained simulations of the membrane-active antimicrobial Peptide maculatin 1.1.

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Molecular dynamics simulations of the helical antimicrobial peptide ovispirin-1 in a zwitterionic dodecylphosphocholine micelle: insights into host-cell toxicity

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21 January 2018

How can a beta-sheet peptide be both a potent antimicrobial and harmfully toxic? Molecular dynamics simulations of protegrin-1 in micelles.

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21 January 2018

Protein folding in membranes: determining energetics of peptide-bilayer interactions

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Using a novel dual fluorescence quenching assay for measurement of tryptophan depth within lipid bilayers to determine hydrophobic alpha-helix locations within membranes

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Mechanism of membrane activity of the antibiotic trichogin GA IV: a two-state transition controlled by peptide concentration.

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Analysis and evaluation of channel models: simulations of alamethicin.

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Molecular Simulations of Lipid Flip-Flop in the Presence of Model Transmembrane Helices

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Protein-induced membrane disorder: a molecular dynamics study of melittin in a dipalmitoylphosphatidylcholine bilayer

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Peptide nanopores and lipid bilayers: interactions by coarse-grained molecular-dynamics simulations

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21 January 2018

Coarse grain models and the computer simulation of soft materials

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21 January 2018

Principles of Fluorescence Spectroscopy

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Simulation of the Spontaneous Aggregation of Phospholipids into Bilayers

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21 January 2018

Translocation of a channel-forming antimicrobial peptide, magainin 2, across lipid bilayers by forming a pore

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https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the antibacterial action of cyclic peptides: insights from coarse-grained MD simulations

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiscale modeling of lipids and lipid bilayers

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of in vitro activities and modes of action of synthetic antimicrobial peptides derived from an alpha-helical 'sequence template'

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https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Use of fluorescence spectroscopy as thermodynamics tool

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https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interactions of phospholipid bilayers with several classes of amphiphilic alpha-helical peptides: insights from coarse-grained molecular dynamics simulations

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Beyond natural antimicrobial peptides: multimeric peptides and other peptidomimetic approaches.

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bacterial membrane lipids in the action of antimicrobial agents

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular Mechanism for Lipid Flip-Flops

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A multiscale coarse-graining method for biomolecular systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Surface density determination in membranes by fluorescence energy transfer

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coarse-grained molecular dynamics simulations of membrane proteins and peptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Giant vesicles: preparations and applications.

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Liposomes as models for antimicrobial peptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alamethicin interaction with lipid membranes: a spectroscopic study on synthetic analogues

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antimicrobial peptides in action

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antimicrobial peptides: successes, challenges and unanswered questions

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The thin line between cell-penetrating and antimicrobial peptides: the case of Pep-1 and Pep-1-K.

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanism and kinetics of peptide partitioning into membranes from all-atom simulations of thermostable peptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fluorescent dyes alter intracellular targeting and function of cell-penetrating tetrapeptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reconstruction of atomistic details from coarse-grained structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and orientation of the mammalian antibacterial peptide cecropin P1 within phospholipid membranes

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interaction of the antimicrobial peptide pheromone Plantaricin A with model membranes: implications for a novel mechanism of action

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural characterization of two pore-forming peptides: consequences of introducing a C-terminal tryptophan

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fluorescent indicators for cytosolic sodium.

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Membrane poration by antimicrobial peptides combining atomistic and coarse-grained descriptions

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of peptide lipidation on membrane perturbing activity: a comparative study on two trichogin analogues

1 reference

https://pubmed.ncbi.nlm.nih.gov/21584808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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