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English
Where splicing joins chromatin.
scientific article published on May 2011
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scholarly article
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stated in
Europe PubMed Central
PMC publication ID
3149878
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21818411%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 February 2020
review article
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stated in
Europe PubMed Central
title
Where splicing joins chromatin
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3149878
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21818411%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 February 2020
author
David Staněk
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3149878
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21818411%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 February 2020
author name string
Jarmila Hnilicová
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3149878
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21818411%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 February 2020
publication date
1 May 2011
1 reference
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Europe PubMed Central
PMC publication ID
3149878
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21818411%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 February 2020
published in
Nucleus
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stated in
Europe PubMed Central
PMC publication ID
3149878
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21818411%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 February 2020
volume
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3149878
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21818411%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 February 2020
issue
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
3149878
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21818411%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 February 2020
page(s)
182-188
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stated in
Europe PubMed Central
PMC publication ID
3149878
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21818411%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 February 2020
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Transcriptional activators differ in their abilities to control alternative splicing
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Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis
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A polypyrimidine/polypurine tract within the Hmga2 minimal promoter: a common feature of many growth-related genes
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Antagonistic effects of T-Ag and VP16 reveal a role for RNA pol II elongation on alternative splicing
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Human STAGA complex is a chromatin-acetylating transcription coactivator that interacts with pre-mRNA splicing and DNA damage-binding factors in vivo
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
6 September 2017
Initial sequencing and analysis of the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
6 September 2017
Direct coupling of transcription and mRNA processing through the thermogenic coactivator PGC-1
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
6 September 2017
Coupling of transcription with alternative splicing: RNA pol II promoters modulate SF2/ASF and 9G8 effects on an exonic splicing enhancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
6 September 2017
Functional association between promoter structure and transcript alternative splicing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
6 September 2017
The human dystrophin gene requires 16 hours to be transcribed and is cotranscriptionally spliced
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
6 September 2017
An ordered pathway of snRNP binding during mammalian pre-mRNA splicing complex assembly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
6 September 2017
Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
Reciprocal intronic and exonic histone modification regions in humans.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
A novel mammalian complex containing Sin3B mitigates histone acetylation and RNA polymerase II progression within transcribed loci
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
The differential interaction of snRNPs with pre-mRNA reveals splicing kinetics in living cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
In situ transcription and splicing in the Balbiani ring 3 gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
Co-transcriptional commitment to alternative splice site selection.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
DNA damage regulates alternative splicing through inhibition of RNA polymerase II elongation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
Cotranscriptional splicing potentiates the mRNA production from a subset of estradiol-stimulated genes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
A 5' splice site enhances the recruitment of basal transcription initiation factors in vivo.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
RNA polymerase II C-terminal domain mediates regulation of alternative splicing by SRp20.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
CoAA, a nuclear receptor coactivator protein at the interface of transcriptional coactivation and RNA splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
A slow RNA polymerase II affects alternative splicing in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
Influence of polymerase II processivity on alternative splicing depends on splice site strength.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
Promoter proximal splice sites enhance transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
14 September 2017
Splicing-dependent RNA polymerase pausing in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
28 September 2017
Efficient transcription through an intron requires the binding of an Sm-type U1 snRNP with intact stem loop II to the splice donor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
28 September 2017
Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
28 September 2017
Biased chromatin signatures around polyadenylation sites and exons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
23 June 2018
Heterochromatin protein 1 (HP1a) positively regulates euchromatic gene expression through RNA transcript association and interaction with hnRNPs in Drosophila
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
23 June 2018
Nucleosomes are well positioned in exons and carry characteristic histone modifications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
23 June 2018
Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
23 June 2018
Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
23 June 2018
Electrophoretic separation of complexes involved in the splicing of precursors to mRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
23 June 2018
Nucleosomes are preferentially positioned at exons in somatic and sperm cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
1 September 2018
Nucleosome positioning as a determinant of exon recognition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
1 September 2018
Control of alternative splicing through siRNA-mediated transcriptional gene silencing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
1 September 2018
Chromatin binding of SRp20 and ASF/SF2 and dissociation from mitotic chromosomes is modulated by histone H3 serine 10 phosphorylation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
1 September 2018
Analysis of U1 small nuclear RNA interaction with cyclin H.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
1 September 2018
Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
1 September 2018
53BP1 exchanges slowly at the sites of DNA damage and appears to require RNA for its association with chromatin.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
1 September 2018
Coordinate regulation of transcription and splicing by steroid receptor coregulators
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
1 September 2018
A handful of intron-containing genes produces the lion's share of yeast mRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
1 September 2018
Splicing of Balbiani ring 1 gene pre-mRNA occurs simultaneously with transcription.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149878
retrieved
1 September 2018
Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.4161%2FNUCL.2.3.15876
retrieved
21 January 2018
Chromatin organization marks exon-intron structure
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.4161%2FNUCL.2.3.15876
retrieved
21 January 2018
Localization of pre-mRNA splicing in mammalian nuclei
2 references
stated in
Crossref
reference URL
https://api.crossref.org/works/10.4161%2FNUCL.2.3.15876
retrieved
21 January 2018
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21818411
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Promoter-driven splicing regulation in fission yeast
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.4161%2FNUCL.2.3.15876
retrieved
21 January 2018
From chromatin to splicing: RNA-processing as a total artwork
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21818411
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Promoter architecture modulates CFTR exon 9 skipping
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21818411
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21818411
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.4161/NUCL.2.3.15876
1 reference
stated in
Europe PubMed Central
PMC publication ID
3149878
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21818411%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 February 2020
PMC publication ID
3149878
1 reference
stated in
Europe PubMed Central
PMC publication ID
3149878
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21818411%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 February 2020
PubMed publication ID
21818411
1 reference
stated in
Europe PubMed Central
PMC publication ID
3149878
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21818411%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 February 2020
ResearchGate publication ID
51548970
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