(Q38149685)

29 August 2017

title

Pattern recognition and probabilistic measures in alignment-free sequence analysis (English)

1 reference

29 August 2017

1 reference

1 reference

Isabel Schwende

1

1 reference

29 August 2017

Tuan D Pham

series ordinal

2

1 reference

29 August 2017

language of work or name

1 reference

3 October 2013

1 reference

Briefings in Bioinformatics

29 August 2017

published in

1 reference

29 August 2017

volume

15

1 reference

29 August 2017

issue

3

1 reference

29 August 2017

page(s)

354-368

1 reference

A general method applicable to the search for similarities in the amino acid sequence of two proteins

29 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Identification of common molecular subsequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

On the complexity of multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Upcoming challenges for multiple sequence alignment methods in the high-throughput era

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

A measure of the similarity of sets of sequences not requiring sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Chaos game representation of gene structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

A phylogenetic analysis of the brassicales clade based on an alignment-free sequence comparison method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

GraphClust: alignment-free structural clustering of local RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

A molecular study of microbe transfer between distant environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Alignment-free sequence comparison-a review

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Biological evaluation of d2, an algorithm for high-performance sequence comparison.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

The comprehensive updated regulatory network of Escherichia coli K-12.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Distributional regimes for the number of k-word matches between two random sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

A measure of DNA sequence dissimilarity based on Mahalanobis distance between frequencies of words.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

KGraph: a system for visualizing and evaluating complex genetic associations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Alignment-free sequence comparison (I): statistics and power

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

A probabilistic measure for alignment-free sequence comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Markov model plus k-word distributions: a synergy that produces novel statistical measures for sequence comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Divergence measures based on the Shannon entropy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Textual data compression in computational biology: a synopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

An information-based sequence distance and its application to whole mitochondrial genome phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Use of the Burrows-Wheeler similarity distribution to the comparison of the proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

A new sequence distance measure for phylogenetic tree construction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Analysis of genomic sequences by Chaos Game Representation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Universal sequence map (USM) of arbitrary discrete sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Image correlation method for DNA sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Next-generation phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Alignment-free phylogeny of whole genomes using underlying subwords

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Performance comparison between k-tuple distance and four model-based distances in phylogenetic tree reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Alignment-free genome tree inference by learning group-specific distance metrics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Alignment-free design of highly discriminatory diagnostic primer sets for Escherichia coli O104:H4 outbreak strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Alignment-free sequence comparison (II): theoretical power of comparison statistics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Fractal MapReduce decomposition of sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Alignment-free detection of local similarity among viral and bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

Comparison study on k-word statistical measures for protein: from sequence to 'sequence space'.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT070

21 January 2018

Identifiers

DOI

10.1093/BIB/BBT070

1 reference

29 August 2017

DBLP publication ID

journals/bib/SchwendeP14

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference