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Playing TETris with DNA modifications.
scientific article published on 13 May 2014
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Europe PubMed Central
PMC publication ID
4198024
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24825349%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
title
Playing TETris with DNA modifications
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4198024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24825349%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
author
Benjamin Delatte
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1
1 reference
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Europe PubMed Central
PMC publication ID
4198024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24825349%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
author name string
Rachel Deplus
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2
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Europe PubMed Central
PMC publication ID
4198024
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24825349%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
François Fuks
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3
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Europe PubMed Central
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4198024
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24825349%20AND%20SRC:MED&resulttype=core&format=json
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18 March 2020
language of work or name
English
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publication date
13 May 2014
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Europe PubMed Central
PMC publication ID
4198024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24825349%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
published in
The EMBO Journal
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stated in
Europe PubMed Central
PMC publication ID
4198024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24825349%20AND%20SRC:MED&resulttype=core&format=json
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18 March 2020
volume
33
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Europe PubMed Central
PMC publication ID
4198024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24825349%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
issue
11
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Europe PubMed Central
PMC publication ID
4198024
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24825349%20AND%20SRC:MED&resulttype=core&format=json
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18 March 2020
page(s)
1198-1211
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Europe PubMed Central
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4198024
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18 March 2020
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Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity
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Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
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Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development
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Deletion of Tet2 in mice leads to dysregulated hematopoietic stem cells and subsequent development of myeloid malignancies
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Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
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B lymphocyte lineage specification, commitment and epigenetic control of transcription by early B cell factor 1.
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Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain
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TET2 inactivation results in pleiotropic hematopoietic abnormalities in mouse and is a recurrent event during human lymphomagenesis
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retrieved
6 September 2017
Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Clinical effect of point mutations in myelodysplastic syndromes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Regulation of mammalian DNA methyltransferases: a route to new mechanisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Site-specific interplay between O-GlcNAcylation and phosphorylation in cellular regulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Detection of mutant TET2 in myeloid malignancies other than myeloproliferative neoplasms: CMML, MDS, MDS/MPN and AML.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Cross-talk between GlcNAcylation and phosphorylation: site-specific phosphorylation dynamics in response to globally elevated O-GlcNAc
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Mechanisms of disease: Histone modifications in Huntington's disease
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Friedreich's ataxia: autosomal recessive disease caused by an intronic GAA triplet repeat expansion
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Specifically decreased collagen biosynthesis in scurvy dissociated from an effect on proline hydroxylation and correlated with body weight loss. In vitro studies in guinea pig calvarial bones
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Ascorbate requirement for hydroxylation and secretion of procollagen: relationship to inhibition of collagen synthesis in scurvy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
6 September 2017
Whole-genome DNA methylation profiling using MethylCap-seq.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
14 September 2017
PU.1 target genes undergo Tet2-coupled demethylation and DNMT3b-mediated methylation in monocyte-to-osteoclast differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
14 September 2017
5-Hydroxymethylcytosine is an essential intermediate of active DNA demethylation processes in primary human monocytes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
14 September 2017
Ascorbate induces ten-eleven translocation (Tet) methylcytosine dioxygenase-mediated generation of 5-hydroxymethylcytosine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
14 September 2017
MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
14 September 2017
Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
14 September 2017
Transcription of the FMR1 gene in individuals with fragile X syndrome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
28 September 2017
Identification of TET1 Partners That Control Its DNA-Demethylating Function.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
23 June 2018
TET1 controls CNS 5-methylcytosine hydroxylation, active DNA demethylation, gene transcription, and memory formation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
23 June 2018
PPARγ-induced PARylation promotes local DNA demethylation by production of 5-hydroxymethylcytosine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
23 June 2018
Dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
23 June 2018
Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
23 June 2018
How we treat higher-risk myelodysplastic syndromes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
PRDM14 promotes active DNA demethylation through the ten-eleven translocation (TET)-mediated base excision repair pathway in embryonic stem cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
TET3-OGT interaction increases the stability and the presence of OGT in chromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
HCV infection and miravirsen
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
Ascorbic acid enhances Tet-mediated 5-methylcytosine oxidation and promotes DNA demethylation in mammals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
Replacement of Oct4 by Tet1 during iPSC induction reveals an important role of DNA methylation and hydroxymethylation in reprogramming.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
Dynamics of 5-hydroxymethylcytosine and chromatin marks in Mammalian neurogenesis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
Increased 5-methylcytosine and decreased 5-hydroxymethylcytosine levels are associated with reduced striatal A2AR levels in Huntington's disease
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
DNA methylation/demethylation network expression in psychotic patients with a history of alcohol abuse.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
H3K9me2 attracts PGC7 in the zygote to prevent Tet3-mediated oxidation of 5-methylcytosine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
UDP-N-acetylglucosaminyl transferase (OGT) in brain tissue: temperature sensitivity and subcellular distribution of cytosolic and nuclear enzyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
TET1, a member of a novel protein family, is fused to MLL in acute myeloid leukemia containing the t(10;11)(q22;q23).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
31 August 2018
Mechanism and Stem-Cell Activity of 5-Carboxycytosine Decarboxylation Determined by Isotope Tracing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4198024
retrieved
3 December 2018
Spi-1/PU.1 oncoprotein affects splicing decisions in a promoter binding-dependent manner
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24825349
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
DNA triplet repeats mediate heterochromatin-protein-1-sensitive variegated gene silencing
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24825349
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.15252/EMBJ.201488290
1 reference
stated in
Europe PubMed Central
PMC publication ID
4198024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24825349%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
PMC publication ID
4198024
1 reference
stated in
Europe PubMed Central
PMC publication ID
4198024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24825349%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
PubMed publication ID
24825349
1 reference
stated in
Europe PubMed Central
PMC publication ID
4198024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24825349%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
ResearchGate publication ID
262302125
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