(Q38218283)

31 August 2017

title

Cell cycle-regulated transcription: effectively using a genomics toolbox (English)

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31 August 2017

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Sara L Bristow

1

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31 August 2017

Adam R Leman

series ordinal

2

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31 August 2017

Steven B Haase

series ordinal

3

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31 August 2017

language of work or name

English

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publication date

1 January 2014

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Methods in Molecular Biology

31 August 2017

published in

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31 August 2017

volume

1170

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31 August 2017

page(s)

3-27

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31 August 2017

cites work

Direct RNA sequencing

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12 December 2020

Cell cycle regulated gene expression in yeasts

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12 December 2020

Cyclin-dependent kinases: engines, clocks, and microprocessors

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12 December 2020

Transcription networks and cyclin/CDKs: the yin and yang of cell cycle oscillators

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12 December 2020

The yeast DNA polymerase I transcript is regulated in both the mitotic cell cycle and in meiosis and is also induced after DNA damage.

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12 December 2020

Comparison of computational methods for the identification of cell cycle-regulated genes

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12 December 2020

A probabilistic model for cell cycle distributions in synchrony experiments.

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12 December 2020

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface

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12 December 2020

Transcriptional activation of CLN1, CLN2, and a putative new G1 cyclin (HCS26) by SWI4, a positive regulator of G1-specific transcription

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12 December 2020

Transcriptional regulatory networks in Saccharomyces cerevisiae

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12 December 2020

Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network

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12 December 2020

Forkhead transcription factors, Fkh1p and Fkh2p, collaborate with Mcm1p to control transcription required for M-phase

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12 December 2020

Serial regulation of transcriptional regulators in the yeast cell cycle

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12 December 2020

Improving PacBio long read accuracy by short read alignment

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12 December 2020

The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae

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12 December 2020

The forkhead protein Fkh2 is a component of the yeast cell cycle transcription factor SFF.

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12 December 2020

Regulation of the RAD6 gene of Saccharomyces cerevisiae in the mitotic cell cycle and in meiosis.

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12 December 2020

Mechanisms that help the yeast cell cycle clock tick: G2 cyclins transcriptionally activate G2 cyclins and repress G1 cyclins

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12 December 2020

Identification of cell cycle-regulated genes in fission yeast

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12 December 2020

Constraining G1-specific transcription to late G1 phase: the MBF-associated corepressor Nrm1 acts via negative feedback.

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12 December 2020

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

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12 December 2020

Targets of the cyclin-dependent kinase Cdk1

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12 December 2020

Tightly regulated, beta-estradiol dose-dependent expression system for yeast

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12 December 2020

Cell cycle regulated transcription in yeast.

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12 December 2020

Cell-cycle regulation of yeast histone mRNA.

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12 December 2020

Regulation of cell cycle-specific gene expression through cyclin-dependent kinase-mediated phosphorylation of the forkhead transcription factor Fkh2p

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12 December 2020

Transcriptional regulation and function during the human cell cycle

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12 December 2020

Cell cycle-dependent expression of thymidylate synthase in Saccharomyces cerevisiae.

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12 December 2020

Cell Cycle-Regulated Transcription through the FHA Domain of Fkh2p and the Coactivator Ndd1p

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12 December 2020

Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth

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12 December 2020

A role for the transcription factors Mbp1 and Swi4 in progression from G1 to S phase.

1 reference

12 December 2020

Fast-acting and nearly gratuitous induction of gene expression and protein depletion in Saccharomyces cerevisiae.

1 reference

12 December 2020

The cell cycle-regulated genes of Schizosaccharomyces pombe

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12 December 2020

The yeast gene, DBF4, essential for entry into S phase is cell cycle regulated

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12 December 2020

Evidence that a free-running oscillator drives G1 events in the budding yeast cell cycle

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12 December 2020

Function of hybrid human-yeast cyclin-dependent kinases in Saccharomyces cerevisiae.

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12 December 2020

Daughter-specific transcription factors regulate cell size control in budding yeast

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12 December 2020

Replication origins and timing of temporal replication in budding yeast: how to solve the conundrum?

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12 December 2020

Microarrays and cell cycle transcription in yeast

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12 December 2020

Genome-wide location and function of DNA binding proteins

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12 December 2020

Dynamic changes in nucleosome occupancy are not predictive of gene expression dynamics but are linked to transcription and chromatin regulators

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12 December 2020

Periodic gene expression program of the fission yeast cell cycle.

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12 December 2020

Specific interaction between RNA phage coat proteins and RNA.

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12 December 2020

Single-cell systems biology by super-resolution imaging and combinatorial labeling

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12 December 2020

Cell cycle-regulated transcription of the CLB2 gene is dependent on Mcm1 and a ternary complex factor

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12 December 2020

DNA chips: state-of-the art.

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12 December 2020

Positive feedback in the activation of G1 cyclins in yeast

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12 December 2020

The Forkhead transcription factor Hcm1 regulates chromosome segregation genes and fills the S-phase gap in the transcriptional circuitry of the cell cycle

1 reference

12 December 2020

Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle

1 reference

12 December 2020

RNA-Seq: a revolutionary tool for transcriptomics

1 reference

12 December 2020

Mcm1 is required to coordinate G2-specific transcription in Saccharomyces cerevisiae

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12 December 2020

Using fluorescent proteins to study mRNA trafficking in living cells.

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12 December 2020

Mcm1p-induced DNA bending regulates the formation of ternary transcription factor complexes.

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12 December 2020

Identification of genes periodically expressed in the human cell cycle and their expression in tumors

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12 December 2020

Expression of the yeast DNA primase gene, PRI1, is regulated within the mitotic cell cycle and in meiosis

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12 December 2020

Forkhead-like transcription factors recruit Ndd1 to the chromatin of G2/M-specific promoters

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12 December 2020

Periodic transcription: a cycle within a cycle

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12 December 2020

Probing sequence-specific RNA recognition by the bacteriophage MS2 coat protein.

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12 December 2020

The CDC8 transcript is cell cycle regulated in yeast and is expressed coordinately with CDC9 and CDC21 at a point preceding histone transcription

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12 December 2020

Localization of ASH1 mRNA particles in living yeast

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12 December 2020

CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast

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12 December 2020

A potential positive feedback loop controlling CLN1 and CLN2 gene expression at the start of the yeast cell cycle

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12 December 2020

Fusion of GAL4-VP16 to a steroid-binding domain provides a tool for gratuitous induction of galactose-responsive genes in yeast

1 reference

12 December 2020

S-phase-promoting cyclin-dependent kinases prevent re-replication by inhibiting the transition of replication origins to a pre-replicative state

1 reference

12 December 2020

Global control of cell-cycle transcription by coupled CDK and network oscillators

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12 December 2020

The product of the Saccharomyces cerevisiae cell cycle gene DBF2 has homology with protein kinases and is periodically expressed in the cell cycle

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12 December 2020

Single-molecule analysis of gene expression using two-color RNA labeling in live yeast

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12 December 2020

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae

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12 December 2020

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

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12 December 2020

Identification of anaphase promoting complex substrates in S. cerevisiae

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12 December 2020

Turning single cells into microarrays by super-resolution barcoding

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12 December 2020

Real-time kinetics of gene activity in individual bacteria

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12 December 2020

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

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12 December 2020

The role of phosphorylation and the CDC28 protein kinase in cell cycle-regulated nuclear import of the S. cerevisiae transcription factor SWI5.

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12 December 2020

Molecular analysis of a cell lineage

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12 December 2020

A genome-wide transcriptional analysis of the mitotic cell cycle

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12 December 2020

The yeast SWI4 protein contains a motif present in developmental regulators and is part of a complex involved in cell-cycle-dependent transcription

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12 December 2020

Cell cycle-regulated phosphorylation of Swi6 controls its nuclear localization

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12 December 2020

Periodic events in the cell cycle

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12 December 2020

Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data

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12 December 2020

Hybrid error correction and de novo assembly of single-molecule sequencing reads

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12 December 2020

Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision

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12 December 2020

Periodic transcription as a means of regulating gene expression during the cell cycle: contrasting modes of expression of DNA ligase genes in budding and fission yeast

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12 December 2020

Direct induction of G1-specific transcripts following reactivation of the Cdc28 kinase in the absence of de novo protein synthesis

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12 December 2020

Regulated nuclear localisation of the yeast transcription factor Ace2p controls expression of chitinase (CTS1) in Saccharomyces cerevisiae

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12 December 2020

Imaging intracellular RNA distribution and dynamics in living cells

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12 December 2020

RNA dynamics in live Escherichia coli cells

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12 December 2020

Cell cycle regulation of SW15 is required for mother-cell-specific HO transcription in yeast

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12 December 2020

A central role for SWI6 in modulating cell cycle Start-specific transcription in yeast

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12 December 2020

Recruitment of Thr 319-phosphorylated Ndd1p to the FHA domain of Fkh2p requires Clb kinase activity: a mechanism for CLB cluster gene activation

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12 December 2020

Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5.

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12 December 2020

Dominoes and clocks: the union of two views of the cell cycle

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12 December 2020

Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae

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12 December 2020

Real-time DNA sequencing from single polymerase molecules

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12 December 2020

Cell cycle-dependent transcription in yeast: promoters, transcription factors, and transcriptomes

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12 December 2020

Transcriptional regulatory code of a eukaryotic genome

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12 December 2020

10.1007/978-1-4939-0888-2_1

Identifiers

DOI

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31 August 2017

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