(Q38271704)

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Extending the capabilities of targeted molecular dynamics: simulation of a large conformational transition in plasminogen activator inhibitor 1.

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scholarly article

1 reference

Europe PubMed Central

1 September 2017

Extending the capabilities of targeted molecular dynamics: simulation of a large conformational transition in plasminogen activator inhibitor 1. (English)

1 reference

Europe PubMed Central

1 September 2017

1 reference

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inferred from title

author name string

P Krüger

1

1 reference

Europe PubMed Central

1 September 2017

S Verheyden

2

1 reference

Europe PubMed Central

1 September 2017

P J Declerck

3

1 reference

Europe PubMed Central

1 September 2017

Y Engelborghs

4

1 reference

Europe PubMed Central

1 September 2017

publication date

1 April 2001

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Europe PubMed Central

1 September 2017

Protein Science

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Europe PubMed Central

1 September 2017

10

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Europe PubMed Central

1 September 2017

4

1 reference

Europe PubMed Central

1 September 2017

798-808

1 reference

Europe PubMed Central

1 September 2017

Structure of a serpin-protease complex shows inhibition by deformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373958

6 September 2017

Plasminogen activator inhibitor 1. Structure of the native serpin, comparison to its other conformers and implications for serpin inactivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373958

6 September 2017

Predictive value of fibrinolytic factors in coronary heart disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373958

6 September 2017

The active conformation of plasminogen activator inhibitor 1, a target for drugs to control fibrinolysis and cell adhesion

1 reference

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Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme

1 reference

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Molecular switch in signal transduction: reaction paths of the conformational changes in ras p21.

1 reference

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Biological implications of a 3 A structure of dimeric antithrombin

1 reference

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6 September 2017

Molecular evolution of plasminogen activator inhibitor-1 functional stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373958

6 September 2017

Mechanisms contributing to the conformational and functional flexibility of plasminogen activator inhibitor-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373958

6 September 2017

On the size of the active site in proteases. I. Papain

1 reference

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Real-space refinement of the structure of hen egg-white lysozyme

1 reference

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6 September 2017

Two different mechanisms in patients with venous thrombosis and defective fibrinolysis: low concentration of plasminogen activator or increased concentration of plasminogen activator inhibitor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373958

6 September 2017

The T<-->R structural transition of insulin; pathways suggested by targeted energy minimization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373958

6 September 2017

Calculation of pathways for the conformational transition between the GTP- and GDP-bound states of the Ha-ras-p21 protein: calculations with explicit solvent simulations and comparison with calculations in vacuum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373958

23 June 2018

Structural basis of latency in plasminogen activator inhibitor-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373958

23 June 2018

Modelling pathways of alpha-chymotrypsin activation and deactivation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373958

31 August 2018

Latent alpha1-antichymotrypsin. A molecular explanation for the inactivation of alpha1-antichymotrypsin in chronic bronchitis and emphysema.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373958

31 August 2018

Conformational changes in serpins: I. the native and cleaved conformations of α 1 -antitrypsin 1 1Edited by J. M. Thornton

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373958

3 December 2018

Effect of stabilizing versus destabilizing interactions on plasminogen activator inhibitor-1

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Endothelial cells produce a latent inhibitor of plasminogen activators that can be activated by denaturants

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Studies of recombinant plasminogen activator inhibitor-1 in rabbits. Pharmacokinetics and evidence for reactivation of latent plasminogen activator inhibitor-1 in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mobile reactive centre of serpins and the control of thrombosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Targeted molecular dynamics: a new approach for searching pathways of conformational transitions

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Preparation and characterization of latent alpha 1-antitrypsin

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A model of the reactive form of plasminogen activator inhibitor-1

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pathophysiology of fibrinolysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Simulation of a complex protein structural change: the T <--> R transition in the insulin hexamer

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Model-free methods of analyzing domain motions in proteins from simulation: a comparison of normal mode analysis and molecular dynamics simulation of lysozyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural insights into serpin-protease complexes reveal the inhibitory mechanism of serpins

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of positively charged residues contributing to the stability of plasminogen activator inhibitor 1

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Simulations of the T <--> R conformational transition in aspartate transcarbamylase

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The structure of a serpin-protease complex revealed by intramolecular distance measurements using donor-donor energy migration and mapping of interaction sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular dynamics of native protein. II. Analysis and nature of motion

1 reference

https://pubmed.ncbi.nlm.nih.gov/11274471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1110/PS.40401

1 reference

Europe PubMed Central

1 September 2017

1 reference

Europe PubMed Central

1 September 2017

1 reference

Europe PubMed Central

1 September 2017

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