(Q38290577)

1 September 2017

title

Probing interactions between the U2 small nuclear ribonucleoprotein and the DEAD-box protein, Prp5. (English)

1 reference

ribonucleoprotein complex

1 September 2017

main subject

1 reference

based on heuristic

inferred from title

author name string

Barham K Abu Abu Dayyeh

1

1 reference

1 September 2017

Tiffani K Quan

2

1 reference

1 September 2017

Marygrace Castro

3

1 reference

1 September 2017

Stephanie W Ruby

4

1 reference

1 September 2017

language of work or name

English

0 references

publication date

1 April 2002

1 reference

Journal of Biological Chemistry

1 September 2017

published in

1 reference

1 September 2017

volume

277

1 reference

1 September 2017

issue

23

1 reference

1 September 2017

page(s)

20221-20233

1 reference

The structure and function of proteins involved in mammalian pre-mRNA splicing

1 September 2017

cites work

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Dynamic RNA-RNA interactions in the spliceosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Mechanical devices of the spliceosome: motors, clocks, springs, and things

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

The protein family of RNA helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

A new twist on RNA helicases: DExH/D box proteins as RNPases

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Molecular biology. RNP remodeling with DExH/D boxes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Multiple roles for the yeast SUB2/yUAP56 gene in splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Identification and characterization of yUAP/Sub2p, a yeast homolog of the essential human pre-mRNA splicing factor hUAP56

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

A cooperative interaction between U2AF65 and mBBP/SF1 facilitates branchpoint region recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Transient interaction of BBP/ScSF1 and Mud2 with the splicing machinery affects the kinetics of spliceosome assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Requirements for U2 snRNP addition to yeast pre-mRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Electrophoresis of ribonucleoproteins reveals an ordered assembly pathway of yeast splicing complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Spliceosome assembly in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Branch nucleophile selection in pre-mRNA splicing: evidence for the bulged duplex model

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

U2AF65 recruits a novel human DEAD box protein required for the U2 snRNP-branchpoint interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

The Saccharomyces cerevisiae Prp5 protein has RNA-dependent ATPase activity with specificity for U2 small nuclear RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Efficient association of U2 snRNPs with pre-mRNA requires an essential U2 RNA structural element

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Mutations in an essential U2 small nuclear RNA structure cause cold-sensitive U2 small nuclear ribonucleoprotein function by favoring competing alternative U2 RNA structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Interactions between highly conserved U2 small nuclear RNA structures and Prp5p, Prp9p, Prp11p, and Prp21p proteins are required to ensure integrity of the U2 small nuclear ribonucleoprotein in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Invariant U2 RNA sequences bordering the branchpoint recognition region are essential for interaction with yeast SF3a and SF3b subunits

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

MutS and MutL activate DNA helicase II in a mismatch-dependent manner

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

CUS1, a suppressor of cold-sensitive U2 snRNA mutations, is a novel yeast splicing factor homologous to human SAP 145.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Combined biochemical and electron microscopic analyses reveal the architecture of the mammalian U2 snRNP

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

CUS2, a yeast homolog of human Tat-SF1, rescues function of misfolded U2 through an unusual RNA recognition motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Probing the structure and function of U2 snRNP with antisense oligonucleotides made of 2'-OMe RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

An early hierarchic role of U1 small nuclear ribonucleoprotein in spliceosome assembly.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Highly efficient chemical synthesis of 2'-O-methyloligoribonucleotides and tetrabiotinylated derivatives; novel probes that are resistant to degradation by RNA or DNA specific nucleases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Sequences That Regulate the Divergent GAL1-GAL10 Promoter in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Vectors for the inducible overexpression of glutathione S-transferase fusion proteins in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Lethal and temperature-sensitive mutations and their suppressors identify an essential structural element in U2 small nuclear RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

New roles for the Snp1 and Exo84 proteins in yeast pre-mRNA splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Antisense probes targeted to an internal domain in U2 snRNP specifically inhibit the second step of pre-mRNA splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

In vitro reconstitution of functional yeast U2 snRNPs

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Electrophoretic separation of complexes involved in the splicing of precursors to mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Pre-mRNA splicing within an assembled yeast spliceosome requires an RNA-dependent ATPase and ATP hydrolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Translational frameshifting: implications for the mechanism of translational frame maintenance

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Transcript leader regions of two Saccharomyces cerevisiae mRNAs contain internal ribosome entry sites that function in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Sequences upstream of the branch site are required to form helix II between U2 and U6 snRNA in a trans-splicing reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

The ATP requirement for U2 snRNP addition is linked to the pre-mRNA region 5' to the branch site

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Who's on first? The U1 snRNP-5' splice site interaction and splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

The yeast MUD2 protein: an interaction with PRP11 defines a bridge between commitment complexes and U2 snRNP addition

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Kinetic role for mammalian SF1/BBP in spliceosome assembly and function after polypyrimidine tract recognition by U2AF.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Translation initiation factor 4A from Saccharomyces cerevisiae: analysis of residues conserved in the D-E-A-D family of RNA helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Crystal structure of the ATPase domain of translation initiation factor 4A from Saccharomyces cerevisiae--the prototype of the DEAD box protein family

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Crystallographic structure of the amino terminal domain of yeast initiation factor 4A, a representative DEAD-box RNA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

A putative ATP binding protein influences the fidelity of branchpoint recognition in yeast splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

A dominant negative mutation in a spliceosomal ATPase affects ATP hydrolysis but not binding to the spliceosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Functional Cus1p is found with Hsh155p in a multiprotein splicing factor associated with U2 snRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

U1-U2 snRNPs interaction induced by an RNA complementary to the 5' end sequence of U1 snRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Cloning and characterization of BCY1, a locus encoding a regulatory subunit of the cyclic AMP-dependent protein kinase in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Helicases: amino acid sequence comparisons and structure-function relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Four yeast spliceosomal proteins (PRP5, PRP9, PRP11, and PRP21) interact to promote U2 snRNP binding to pre-mRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

In vitro studies of the Prp9.Prp11.Prp21 complex indicate a pathway for U2 small nuclear ribonucleoprotein activation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

The yeast RNA gene products are essential for mRNA splicing in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

[14] Genetic applications of yeast transformation with linear and gapped plasmids

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Dynamics of the U1 Small Nuclear Ribonucleoprotein during Yeast Spliceosome Assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

A novel role for the 3' region of introns in pre-mRNA splicing of Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

Measurement and analysis of yeast pre-mRNA sequence contribution to splicing efficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109553200

21 January 2018

Identifiers

DOI

10.1074/JBC.M109553200

1 reference

1 September 2017

1 reference