(Q38308556)

2 September 2017

WaveCNV: allele-specific copy number alterations in primary tumors and xenograft models from next-generation sequencing (English)

1 reference

2 September 2017

1 reference

11

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2 September 2017

Carson Holt

1

1 reference

2 September 2017

Bojan Losic

2

1 reference

2 September 2017

Deepa Pai

3

1 reference

2 September 2017

Zhen Zhao

4

1 reference

2 September 2017

Quang Trinh

5

1 reference

2 September 2017

Sujata Syam

6

1 reference

2 September 2017

Niloofar Arshadi

7

1 reference

2 September 2017

Gun Ho Jang

8

1 reference

2 September 2017

Johar Ali

9

1 reference

2 September 2017

Tim Beck

10

1 reference

2 September 2017

Lakshmi B Muthuswamy

12

1 reference

2 September 2017

language of work or name

English

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publication date

4 November 2013

1 reference

2 September 2017

1 reference

2 September 2017

30

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2 September 2017

6

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2 September 2017

768-774

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Creative Commons Attribution-NonCommercial 3.0 Unported

2 September 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

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cites work

Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

qpure: A tool to estimate tumor cellularity from genome-wide single-nucleotide polymorphism profiles

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

Xenome--a tool for classifying reads from xenograft samples.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

Genome-wide copy number analysis of single cells.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

Absolute quantification of somatic DNA alterations in human cancer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

Development of an orthotopic human pancreatic cancer xenograft model using ultrasound guided injection of cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

Tumour evolution inferred by single-cell sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

Detecting common copy number variants in high-throughput sequencing data by using JointSLM algorithm

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

CNAseg--a novel framework for identification of copy number changes in cancer from second-generation sequencing data.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

Allele-specific copy number analysis of tumors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

rSW-seq: algorithm for detection of copy number alterations in deep sequencing data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

Computational methods for discovering structural variation with next-generation sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

CNV-seq, a new method to detect copy number variation using high-throughput sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

Establishment of human tumor xenografts in immunodeficient mice

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

Sensitive and accurate detection of copy number variants using read depth of coverage

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

Integrated study of copy number states and genotype calls using high-density SNP arrays

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

OncoSNP-SEQ: a statistical approach for the identification of somatic copy number alterations from next-generation sequencing of cancer genomes

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957071

10.1093/BIOINFORMATICS/BTT611

31 August 2018

Identifiers

DOI

1 reference

journals/bioinformatics/HoltLPZTSAJABMM14

2 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 September 2017

PubMed publication ID

24192544

1 reference