(Q38328618)

English

Compensating increases in protein backbone flexibility occur when the Dead ringer AT-rich interaction domain (ARID) binds DNA: a nitrogen-15 relaxation study.

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15802641%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

Compensating increases in protein backbone flexibility occur when the Dead ringer AT-rich interaction domain (ARID) binds DNA: a nitrogen-15 relaxation study (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15802641%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

1

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15802641%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

author name string

Robert D Peterson

2

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15802641%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

Robert T Clubb

3

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15802641%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

publication date

31 March 2005

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15802641%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

Protein Science

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15802641%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

14

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15802641%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

5

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15802641%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

1140-1150

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15802641%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

Structure and DNA-binding sites of the SWI1 AT-rich interaction domain (ARID) suggest determinants for sequence-specific DNA recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

ARID proteins: a diverse family of DNA binding proteins implicated in the control of cell growth, differentiation, and development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

The structure of the Dead ringer-DNA complex reveals how AT-rich interaction domains (ARIDs) recognize DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

Recognition of specific DNA sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

Improved measurement of (15)N-[(1)H] NOEs in the presence of H(N)-water proton chemical exchange

1 reference

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6 September 2017

Backbone dynamics in dihydrofolate reductase complexes: role of loop flexibility in the catalytic mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

Dynamics of the Mrf-2 DNA-binding domain free and in complex with DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

Nmr probes of molecular dynamics: overview and comparison with other techniques

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

ARID proteins come in from the desert

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

Relationships between protein structure and dynamics from a database of NMR-derived backbone order parameters.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

Solution structure of the DNA binding domain from Dead ringer, a sequence-specific AT-rich interaction domain (ARID)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

The novel Mrf-2 DNA-binding domain recognizes a five-base core sequence through major and minor-groove contacts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

The effect of noncollinearity of 15N-1H dipolar and 15N CSA tensors and rotational anisotropy on 15N relaxation, CSA/dipolar cross correlation, and TROSY.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

A novel DNA-binding motif shares structural homology to DNA replication and repair nucleases and polymerases

1 reference

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6 September 2017

Dorsal-mediated repression requires the formation of a multiprotein repression complex at the ventral silencer.

1 reference

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6 September 2017

Solution structure and dynamics of linked cell attachment modules of mouse fibronectin containing the RGD and synergy regions: comparison with the human fibronectin crystal structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

The structure of GABPalpha/beta: an ETS domain- ankyrin repeat heterodimer bound to DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

Characterization of the dead ringer gene identifies a novel, highly conserved family of sequence-specific DNA-binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

The immunoglobulin heavy-chain matrix-associating regions are bound by Bright: a B cell-specific trans-activator that describes a new DNA-binding protein family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

Coupling of local folding to site-specific binding of proteins to DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

A heteronuclear correlation experiment for simultaneous determination of 15N longitudinal decay and chemical exchange rates of systems in slow equilibrium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

Backbone dynamics of the oligomerization domain of p53 determined from 15N NMR relaxation measurements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

Backbone dynamics of Escherichia coli ribonuclease HI: correlations with structure and function in an active enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

Analysis of the backbone dynamics of interleukin-1 beta using two-dimensional inverse detected heteronuclear 15N-1H NMR spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

6 September 2017

Osa associates with the Brahma chromatin remodeling complex and promotes the activation of some target genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

27 September 2017

Structural features of protein-nucleic acid recognition sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

23 June 2018

Protein-DNA recognition complexes: conservation of structure and binding energy in the transition state

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

23 June 2018

Eukaryotic transcription factor-DNA complexes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

23 June 2018

Anisotropic molecular rotational diffusion in 15N spin relaxation studies of protein mobility

1 reference

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23 June 2018

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1 reference

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1 reference

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23 June 2018

Letter to the Editor: 1H, 13C and 15N resonance assignments of the AT-rich interaction domain from the Dead Ringer protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253272

31 August 2018

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1 reference

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31 August 2018

Modulation of transcription factor Ets-1 DNA binding: DNA-induced unfolding of an alpha helix

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The N-terminal arms of lambda repressor wrap around the operator DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/15802641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein backbone dynamics revealed by quasi spectral density function analysis of amide N-15 nuclei

1 reference

https://pubmed.ncbi.nlm.nih.gov/15802641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Off-resonance effects in 15N T2 CPMG measurements

1 reference

https://pubmed.ncbi.nlm.nih.gov/15802641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Anisotropic rotational diffusion of perdeuterated HIV protease from 15N NMR relaxation measurements at two magnetic fields

1 reference

https://pubmed.ncbi.nlm.nih.gov/15802641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spectral densities of nitrogen nuclei in Escherichia coli ribonuclease HI obtained by 15N NMR relaxation and molecular dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/15802641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1110/PS.041154405

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15802641%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15802641%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15802641%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

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