(Q38351866)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19641853%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

title

Conformational entropy changes upon lactose binding to the carbohydrate recognition domain of galectin-3 (English)

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3 February 2020

2

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3 February 2020

Ulf Ryde

4

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3 February 2020

author name string

Carl Diehl

1

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3 February 2020

Kristofer Modig

3

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3 February 2020

Mikael Akke

5

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3 February 2020

publication date

30 July 2009

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19641853%20AND%20SRC:MED&resulttype=core&format=json

Journal of Biomolecular NMR

3 February 2020

published in

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3 February 2020

volume

45

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3 February 2020

issue

1-2

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3 February 2020

page(s)

157-169

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https://scigraph.springernature.com/pub.10.1007/s10858-009-9356-5

3 February 2020

exact match

0 references

cites work

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Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation

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Interpretation of 15N NMR relaxation data of globular proteins using hydrodynamic calculations with HYDRONMR.

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Validation of Molecular Dynamics Simulations of Biomolecules Using NMR Spin Relaxation as Benchmarks: Application to the AMBER99SB Force Field.

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Biosynthetic 13C labeling of aromatic side chains in proteins for NMR relaxation measurements

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Intramolecular dynamics of low molecular weight protein tyrosine phosphatase in monomer-dimer equilibrium studied by NMR: a model for changes in dynamics upon target binding

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Dynamics and entropy of a calmodulin-peptide complex studied by NMR and molecular dynamics

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12 December 2020

Allostery without conformational change. A plausible model

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A study of protein side-chain dynamics from new 2H auto-correlation and 13C cross-correlation NMR experiments: application to the N-terminal SH3 domain from drk.

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Converging free energy estimates: MM-PB(GB)SA studies on the protein-protein complex Ras-Raf.

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Assignment of 1H, 15N and 13C resonances of the carbohydrate recognition domain of human galectin-3

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Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding

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Correlation between changes in nuclear magnetic resonance order parameters and conformational entropy: molecular dynamics simulations of native and denatured staphylococcal nuclease.

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Conformational entropy in molecular recognition by proteins

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Evaluating the Accuracy of the Quasiharmonic Approximation

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Cross-correlation suppressed T1 and NOE experiments for protein side-chain 13CH2 groups

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Heteronuclear NMR spectroscopy for lysine NH(3) groups in proteins: unique effect of water exchange on (15)N transverse relaxation

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Measurement of dipolar cross-correlation in methylene groups in uniformly 13C-, 15N-labeled proteins

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General Framework for Studying the Dynamics of Folded and Nonfolded Proteins by NMR Relaxation Spectroscopy and MD Simulation

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Nmr probes of molecular dynamics: overview and comparison with other techniques

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Slow diffusion of lactose out of galectin-3 crystals monitored by X-ray crystallography: possible implications for ligand-exchange protocols

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12 December 2020

Entropy calculations on the molten globule state of a protein: Side-chain entropies of α-lactalbumin

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12 December 2020

Effect of finite trajectory length on the correlation function analysis of single molecule data

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An efficient 3D NMR technique for correlating the proton and 15N backbone amide resonances with the alpha-carbon of the preceding residue in uniformly 15N/13C enriched proteins

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Backbone motions of free and pheromone-bound major urinary protein I studied by molecular dynamics simulation

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Absolute and relative entropies from computer simulation with applications to ligand binding

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12 December 2020

L-29, an endogenous lectin, binds to glycoconjugate ligands with positive cooperativity

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Thermodynamic analysis of the binding of galactose and poly-N-acetyllactosamine derivatives to human galectin-3.

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Increased protein backbone conformational entropy upon hydrophobic ligand binding

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Fast time scale dynamics of protein backbones: NMR relaxation methods, applications, and functional consequences

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Crankshaft motions of the polypeptide backbone in molecular dynamics simulations of human type-alpha transforming growth factor

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12 December 2020

Fractional 13C enrichment of isolated carbons using [1-13C]- or [2-13C]-glucose facilitates the accurate measurement of dynamics at backbone Cα and side-chain methyl positions in proteins

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12 December 2020

Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution

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12 December 2020

Multiple-timescale dynamics of side-chain carboxyl and carbonyl groups in proteins by 13C nuclear spin relaxation.

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12 December 2020

Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew

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12 December 2020

Conformational differences in liganded and unliganded states of Galectin-3.

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12 December 2020

A method for selecting the bin size of a time histogram

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12 December 2020

10.1007/S10858-009-9356-5

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19641853%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

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