(Q38492496)

3 September 2017

Prediction of hydrodynamic and other solution properties of rigid proteins from atomic- and residue-level models (English)

1 reference

3 September 2017

A Ortega

1

1 reference

3 September 2017

D Amorós

series ordinal

2

1 reference

3 September 2017

J García de la Torre

series ordinal

3

1 reference

3 September 2017

language of work or name

English

0 references

publication date

1 August 2011

1 reference

3 September 2017

1 reference

3 September 2017

101

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3 September 2017

4

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3 September 2017

892-898

1 reference

Global fit and structure optimization of flexible and rigid macromolecules and nanoparticles from analytical ultracentrifugation and other dilute solution properties.

3 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Hydrodynamic modeling: the solution conformation of macromolecules and their complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Calculation of hydrodynamic properties of small nucleic acids from their atomic structure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Calculation of hydrodynamic properties of globular proteins from their atomic-level structure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Calculation of translational friction and intrinsic viscosity. II. Application to globular proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Predicting protein diffusion coefficients

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Electrostatics of hemoglobins from measurements of the electric dichroism and computer simulations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Hydrodynamic properties of a double-helical model for DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Modeling the electrophoresis of rigid polyions: application to lysozyme

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Solution structure of biopolymers: a new method of constructing a bead model.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Hydrodynamic properties of rigid particles: comparison of different modeling and computational procedures

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Absolute protein-protein association rate constants from flexible, coarse-grained Brownian dynamics simulations: the role of intermolecular hydrodynamic interactions in barnase-barstar association

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Intrinsic viscosity of bead models for macromolecules and nanoparticles.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

HYDRONMR: prediction of NMR relaxation of globular proteins from atomic-level structures and hydrodynamic calculations.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Intrinsic Viscosity of Proteins and Platonic Solids by Boundary Element Methods

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Developments in the US-SOMO bead modeling suite: new features in the direct residue-to-bead method, improved grid routines, and influence of accessible surface area screening.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Equivalent radii and ratios of radii from solution properties as indicators of macromolecular conformation, shape, and flexibility.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

SOMO (SOlution MOdeler) differences between X-Ray- and NMR-derived bead models suggest a role for side chain flexibility in protein hydrodynamics.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Anisotropic rotational diffusion in model-free analysis for a ternary DHFR complex

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Simulation of the conformation and dynamics of a double-helical model for DNA.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3175065

Hydrodynamic bead modeling of biological macromolecules

31 August 2018

1 reference

12 December 2020

Improved calculation of rotational diffusion and intrinsic viscosity of bead models for macromolecules and nanoparticles

1 reference

12 December 2020

Hydration from hydrodynamics. General considerations and applications of bead modelling to globular proteins

1 reference

12 December 2020

3D Brownian Diffusion of Submicron-Sized Particle Clusters

1 reference

12 December 2020

Striking Effects of Hydrodynamic Interactions on the Simulated Diffusion and Folding of Proteins

1 reference

12 December 2020

X-ray and neutron scattering analyses of hydration shells: a molecular interpretation based on sequence predictions and modelling fits

1 reference

12 December 2020

Hydrodynamic properties of nitrogenase — the MoFe protein from Azotobacter vinelandii studied by dynamic light scattering and hydrodynamic modelling

1 reference

12 December 2020

Efficient, accurate calculation of rotational diffusion and NMR relaxation of globular proteins from atomic-level structures and approximate hydrodynamic calculations

1 reference

12 December 2020

8 The translational friction coefficient of proteins

1 reference

12 December 2020

Frictional coefficients of multisubunit structures. I. Theory

1 reference

12 December 2020

10.1016/J.BPJ.2011.06.046

Identifiers

DOI

1 reference

3 September 2017

1 reference

3 September 2017

1 reference