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English
Side chain substitution benchmark for peptide/MHC interaction.
scientific article published on 23 April 2008
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
2386744
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18434501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 January 2020
title
Side chain substitution benchmark for peptide/MHC interaction
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
2386744
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18434501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 January 2020
author
Ulrich Omasits
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
2386744
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18434501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 January 2020
author name string
Bernhard Knapp
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
2386744
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18434501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 January 2020
Wolfgang Schreiner
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
2386744
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18434501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 January 2020
publication date
23 April 2008
1 reference
stated in
Europe PubMed Central
PMC publication ID
2386744
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18434501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 January 2020
published in
Protein Science
1 reference
stated in
Europe PubMed Central
PMC publication ID
2386744
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18434501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 January 2020
volume
17
1 reference
stated in
Europe PubMed Central
PMC publication ID
2386744
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18434501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 January 2020
issue
6
1 reference
stated in
Europe PubMed Central
PMC publication ID
2386744
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18434501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 January 2020
page(s)
977-982
1 reference
stated in
Europe PubMed Central
PMC publication ID
2386744
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18434501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 January 2020
cites work
IRECS: a new algorithm for the selection of most probable ensembles of side-chain conformations in protein models
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2386744
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6 September 2017
Methods and protocols for prediction of immunogenic epitopes
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PubMed Central
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6 September 2017
How TCRs bind MHCs, peptides, and coreceptors
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PubMed Central
reference URL
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6 September 2017
All are not equal: a benchmark of different homology modeling programs
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PubMed Central
reference URL
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6 September 2017
SCit: web tools for protein side chain conformation analysis
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2386744
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6 September 2017
A graph-theory algorithm for rapid protein side-chain prediction
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PubMed Central
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6 September 2017
The Protein Data Bank
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6 September 2017
SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling
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6 September 2017
Covalent assembly of a soluble T cell receptor-peptide-major histocompatibility class I complex
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6 September 2017
Molecular dynamics study of a complex between the human histocompatibility antigen HLA-A2 and the IMP58-66 nonapeptide from influenza virus matrix protein
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23 June 2018
Comparison between computational alanine scanning and per-residue binding free energy decomposition for protein-protein association using MM-GBSA: application to the TCR-p-MHC complex.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2386744
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31 August 2018
Ab initio prediction of peptide-MHC binding geometry for diverse class I MHC allotypes
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31 August 2018
Structural prediction of peptides binding to MHC class I molecules
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2386744
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31 August 2018
Large-scale molecular dynamics simulations of HLA-A*0201 complexed with a tumor-specific antigenic peptide: can the alpha3 and beta2m domains be neglected?
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2386744
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31 August 2018
The three-dimensional structure of HLA-B27 at 2.1 A resolution suggests a general mechanism for tight peptide binding to MHC
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/18434501
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Magnitude of structural changes of the T-cell receptor binding regions determine the strength of T-cell antagonism: molecular dynamics simulations of HLA-DR4 (DRB1*0405) complexed with analogue peptide
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/18434501
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1110/PS.073402508
1 reference
stated in
Europe PubMed Central
PMC publication ID
2386744
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18434501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 January 2020
PMC publication ID
2386744
1 reference
stated in
Europe PubMed Central
PMC publication ID
2386744
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18434501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 January 2020
PubMed publication ID
18434501
1 reference
stated in
Europe PubMed Central
PMC publication ID
2386744
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18434501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 January 2020
ResearchGate publication ID
5417390
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