(Q38598069)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21961582%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

title

Physical limits on cooperative protein-DNA binding and the kinetics of combinatorial transcription regulation (English)

1 reference

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13 February 2020

2

1 reference

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13 February 2020

author name string

Nico Geisel

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21961582%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

language of work or name

English

0 references

publication date

1 October 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21961582%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

number of pages

11

1 reference

inferred from page(s)

published in

Biophysical Journal

1 reference

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13 February 2020

volume

101

1 reference

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13 February 2020

issue

7

1 reference

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13 February 2020

page(s)

1569-1579

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21961582%20AND%20SRC:MED&resulttype=core&format=json

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

13 February 2020

cites work

1 reference

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The cost of gene expression underlies a fitness trade-off in yeast

6 September 2017

1 reference

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Quantitative transcription factor binding kinetics at the single-molecule level

6 September 2017

1 reference

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Probing transcription factor dynamics at the single-molecule level in a living cell

6 September 2017

1 reference

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Direct observation of individual RecA filaments assembling on single DNA molecules

6 September 2017

1 reference

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How proteins search for their specific sites on DNA: the role of DNA conformation

6 September 2017

1 reference

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PINT: Protein-protein Interactions Thermodynamic Database

6 September 2017

1 reference

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Role of RcsF in signaling to the Rcs phosphorelay pathway in Escherichia coli

6 September 2017

1 reference

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Optimality and evolutionary tuning of the expression level of a protein

6 September 2017

1 reference

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Nonlinear protein degradation and the function of genetic circuits

6 September 2017

1 reference

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Transcriptional regulation by the numbers: applications

6 September 2017

1 reference

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Transcriptional regulation by the numbers: models.

6 September 2017

1 reference

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How do site-specific DNA-binding proteins find their targets?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

On schemes of combinatorial transcription logic

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

Physical constraints and functional characteristics of transcription factor-DNA interaction.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

Repression of deoP2 in Escherichia coli by CytR: conversion of a transcription activator into a repressor

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

Synergistic transcription activation: a dual role for CRP in the activation of an Escherichia coli promoter depending on MalT and CRP

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

DNA specificity enhanced by sequential binding of protein monomers.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

Escherichia coli single-stranded DNA-binding protein: multiple DNA-binding modes and cooperativities

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

On the specificity of DNA-protein interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

A new mechanism for coactivation of transcription initiation: repositioning of an activator triggered by the binding of a second activator

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

Collaborative competition mechanism for gene activation in vivo

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

A simple mechanism for co-dependence on two activators at an Escherichia coli promoter

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

Kinetics of target site localization of a protein on DNA: a stochastic approach.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

Analysis of CRP-CytR interactions at the Escherichia coli udp promoter

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

The cyclic AMP (cAMP)-cAMP receptor protein complex functions both as an activator and as a corepressor at the tsx-p2 promoter of Escherichia coli K-12

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

Specificity, free energy and information content in protein-DNA interactions

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

The protein burden of lac operon products

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

The design of transcription-factor binding sites is affected by combinatorial regulation

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

Allosteric effects of DNA on transcriptional regulators

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

On the role of the multiple regulatory elements involved in the activation of the Escherichia coli malEp promoter.

31 August 2018

1 reference

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Transcriptional co-activation at the ansB promoters: involvement of the activating regions of CRP and FNR when bound in tandem.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3183818

Co-dependent positive regulation of the ansB promoter of Escherichia coli by CRP and the FNR protein: a molecular analysis.

31 August 2018

1 reference

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

31 August 2018

1 reference

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Kinetic Studies of Fos·Jun·DNA Complex Formation: DNA Binding Prior to Dimerization†

31 August 2018

1 reference

12 December 2020

Optimal target search on a fast-folding polymer chain with volume exchange

1 reference

12 December 2020

Twist- and tension-mediated elastic coupling between DNA-binding proteins

1 reference

12 December 2020

Gene-regulatory modules in Escherichia coli: nucleoprotein complexes formed by cAMP-CRP and CytR at the nupG promoter

1 reference

12 December 2020

10.1016/J.BPJ.2011.08.041

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21961582%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21961582%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

PubMed publication ID

21961582

1 reference