(Q38636491)

5 September 2017

Sliding MinPD: building evolutionary networks of serial samples via an automated recombination detection approach (English)

1 reference

5 September 2017

Patricia Buendia

1

1 reference

5 September 2017

Giri Narasimhan

series ordinal

2

1 reference

5 September 2017

language of work or name

English

0 references

publication date

23 August 2007

1 reference

5 September 2017

1 reference

5 September 2017

23

1 reference

5 September 2017

22

1 reference

5 September 2017

2993-3000

1 reference

Tree and rate estimation by local evaluation of heterochronous nucleotide data.

5 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

MinPD: distance-based phylogenetic analysis and recombination detection of serially-sampled HIV quasispecies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Application of phylogenetic networks in evolutionary studies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Recombination Analysis Tool (RAT): a program for the high-throughput detection of recombination

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Evaluation of methods for detecting recombination from DNA sequences: computer simulations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Consequences of recombination on traditional phylogenetic analysis.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Latent reservoirs of HIV: obstacles to the eradication of virus

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Automated phylogenetic detection of recombination using a genetic algorithm.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

RDP2: recombination detection and analysis from sequence alignments.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

A simulation study of the reliability of recombination detection methods.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

A new algorithm for analysis of within-host HIV-1 evolution.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Reconstructing genealogies of serial samples under the assumption of a molecular clock using serial-sample UPGMA.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Human immunodeficiency virus type 1 quasi species that rebound after discontinuation of highly active antiretroviral therapy are similar to the viral quasi species present before initiation of therapy

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187926

Properties of a neutral allele model with intragenic recombination

3 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17717035

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17717035

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTM413

1 reference

journals/bioinformatics/BuendiaN07

5 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

5 September 2017

PubMed publication ID

17717035

1 reference