(Q38706431)

5 September 2017

Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours (English)

1 reference

5 September 2017

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Kamal Kishore

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Matthew D Eldridge

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Steven W Wingett

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Peter Fraser

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

author name string

Danita Pearson

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Stefan Schoenfelder

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

V Peter Collins

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

publication date

27 June 2017

1 reference

5 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

volume

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

page(s)

125

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1186/s13059-017-1253-8

2 June 2020

exact match

0 references

cites work

HiCUP: pipeline for mapping and processing Hi-C data

1 reference

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Comparison of Hi-C results using in-solution versus in-nucleus ligation

6 September 2017

1 reference

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Glioblastoma: pathology, molecular mechanisms and markers

6 September 2017

1 reference

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A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

6 September 2017

1 reference

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Integrated analysis of whole-genome paired-end and mate-pair sequencing data for identifying genomic structural variations in multiple myeloma

6 September 2017

1 reference

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DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly

6 September 2017

1 reference

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ROR1 expression correlated with poor clinical outcome in human ovarian cancer

6 September 2017

1 reference

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Detection of gene rearrangements in targeted clinical next-generation sequencing.

6 September 2017

1 reference

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ROR1, an embryonic protein with an emerging role in cancer biology

6 September 2017

1 reference

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Glioblastoma multiforme: a look inside its heterogeneous nature

6 September 2017

1 reference

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Fusion genes in solid tumors: an emerging target for cancer diagnosis and treatment

6 September 2017

1 reference

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Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

Two Distinct Categories of Focal Deletions in Cancer Genomes

6 September 2017

1 reference

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A survey of intragenic breakpoints in glioblastoma identifies a distinct subset associated with poor survival

6 September 2017

1 reference

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Bellerophon: a hybrid method for detecting interchromosomal rearrangements at base pair resolution using next-generation sequencing data

6 September 2017

1 reference

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PeSV-Fisher: identification of somatic and non-somatic structural variants using next generation sequencing data

6 September 2017

1 reference

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Amplified and homozygously deleted genes in glioblastoma: impact on gene expression levels

6 September 2017

1 reference

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DELLY: structural variant discovery by integrated paired-end and split-read analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

ROR1 and ROR2 in Human Malignancies: Potentials for Targeted Therapy

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

Oncogene-mediated alterations in chromatin conformation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

Spatial organization of the mouse genome and its role in recurrent chromosomal translocations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

DNA damage defines sites of recurrent chromosomal translocations in B lymphocytes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

Chromothripsis is a common mechanism driving genomic rearrangements in primary and metastatic colorectal cancer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

SLOPE: a quick and accurate method for locating non-SNP structural variation from targeted next-generation sequence data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

The constitutional t(11;22): implications for a novel mechanism responsible for gross chromosomal rearrangements.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome

6 September 2017

1 reference

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The effect of translocation-induced nuclear reorganization on gene expression

6 September 2017

1 reference

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Complex landscapes of somatic rearrangement in human breast cancer genomes

6 September 2017

1 reference

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BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

Mutation-associated fusion cancer genes in solid tumors.

6 September 2017

1 reference

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Capturing chromosome conformation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

Erythroid Kruppel-like factor (EKLF) coordinates erythroid cell proliferation and hemoglobinization in cell lines derived from EKLF null mice

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

A revision of the lissencephaly and Miller-Dieker syndrome critical regions in chromosome 17p13.3.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

Molecular biology of double-minute chromosomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

New pattern of EGFR amplification in glioblastoma and the relationship of gene copy number with gene expression profile.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

1p36 is a preferential target of chromosome 1 deletions in astrocytic tumours and homozygously deleted in a subset of glioblastomas

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

Chromosome arm painting probes

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488307

Genomic disorders: structural features of the genome can lead to DNA rearrangements and human disease traits

1 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28655341

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S13059-017-1253-8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

2 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28655341%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

PubMed publication ID

28655341

1 reference