(Q38973824)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27712622%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

review article

2 references

22 October 2022

Coronavirus cis-Acting RNA Elements (English)

1 reference

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25 March 2020

4

1 reference

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25 March 2020

author name string

R Madhugiri

series ordinal

1

1 reference

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25 March 2020

M Fricke

series ordinal

2

1 reference

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25 March 2020

M Marz

series ordinal

3

1 reference

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25 March 2020

publication date

6 September 2016

2 references

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25 March 2020

22 October 2022

Advances in Virus Research

2 references

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25 March 2020

22 October 2022

96

1 reference

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25 March 2020

page(s)

127-163

1 reference

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Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia

25 March 2020

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Cis-active RNA elements (CREs) and picornavirus RNA replication

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Genetic evidence of a long-range RNA-RNA interaction between the genomic 5' untranslated region and the nonstructural protein 1 coding region in murine and bovine coronaviruses

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A conserved RNA pseudoknot in a putative molecular switch domain of the 3'-untranslated region of coronaviruses is only marginally stable.

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Transmissible Gastroenteritis Coronavirus Packaging Signal Is Located at the 5' End of the Virus Genome

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Coronaviruses use discontinuous extension for synthesis of subgenome-length negative strands

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Nonstructural Proteins 7 and 8 of Feline Coronavirus Form a 2:1 Heterotrimer That Exhibits Primer-Independent RNA Polymerase Activity

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Bovine coronavirus 5'-proximal genomic acceptor hotspot for discontinuous transcription is 65 nucleotides wide

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Improved methods for structure probing in large RNAs: a rapid ‘heterologous’ sequencing approach is coupled to the direct mapping of nudease accessible sites. Application to the 5′nal domain of eukaryotic 28S rRNA

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Probing the structure of RNAs in solution

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Major genetic marker of nidoviruses encodes a replicative endoribonuclease

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Analysis of a hypervariable region in the 3' non-coding end of the infectious bronchitis virus genome

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Secondary structure and function of the 5'-proximal region of the equine arteritis virus RNA genome

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Coronavirus mRNA synthesis involves fusion of non-contiguous sequences

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Sequence motifs involved in the regulation of discontinuous coronavirus subgenomic RNA synthesis

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Analysis of cis-acting sequences essential for coronavirus defective interfering RNA replication

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The RNA structures engaged in replication and transcription of the A59 strain of mouse hepatitis virus

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The polypyrimidine tract-binding protein affects coronavirus RNA accumulation levels and relocalizes viral RNAs to novel cytoplasmic domains different from replication-transcription sites

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Genome-wide analysis of protein-protein interactions and involvement of viral proteins in SARS-CoV replication

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ViennaRNA Package 2.0

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RNA structure analysis of alphacoronavirus terminal genome regions

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Mutagenesis of the murine hepatitis virus nsp1-coding region identifies residues important for protein processing, viral RNA synthesis, and viral replication

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12 December 2020

Suppression of host gene expression by nsp1 proteins of group 2 bat coronaviruses

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12 December 2020

Coronavirus Nsp10, a critical co-factor for activation of multiple replicative enzymes

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12 December 2020

RNA-RNA and RNA-protein interactions in coronavirus replication and transcription

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12 December 2020

Functional analysis of the murine coronavirus genomic RNA packaging signal

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12 December 2020

cis-acting sequences required for coronavirus infectious bronchitis virus defective-RNA replication and packaging.

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12 December 2020

Mouse hepatitis virus stem-loop 2 adopts a uYNMG(U)a-like tetraloop structure that is highly functionally tolerant of base substitutions

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12 December 2020

Characterization of the RNA components of a putative molecular switch in the 3' untranslated region of the murine coronavirus genome

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12 December 2020

Infidelity of SARS-CoV Nsp14-exonuclease mutant virus replication is revealed by complete genome sequencing

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12 December 2020

Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage

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12 December 2020

Cooperation of an RNA packaging signal and a viral envelope protein in coronavirus RNA packaging

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12 December 2020

Putative cis-acting stem-loops in the 5' untranslated region of the severe acute respiratory syndrome coronavirus can substitute for their mouse hepatitis virus counterparts

1 reference

12 December 2020

Identification of the cis-acting signal for minus-strand RNA synthesis of a murine coronavirus: implications for the role of minus-strand RNA in RNA replication and transcription

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12 December 2020

Engineering the largest RNA virus genome as an infectious bacterial artificial chromosome

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12 December 2020

Structural lability in stem-loop 1 drives a 5' UTR-3' UTR interaction in coronavirus replication.

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12 December 2020

The cellular RNA helicase DDX1 interacts with coronavirus nonstructural protein 14 and enhances viral replication

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12 December 2020

Coronavirus subgenomic minus-strand RNAs and the potential for mRNA replicons

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12 December 2020

Selective replication of coronavirus genomes that express nucleocapsid protein

1 reference

12 December 2020

Stem-loop IV in the 5' untranslated region is a cis-acting element in bovine coronavirus defective interfering RNA replication

1 reference

12 December 2020

A phylogenetically conserved hairpin-type 3' untranslated region pseudoknot functions in coronavirus RNA replication

1 reference

12 December 2020

Interaction between SARS-CoV helicase and a multifunctional cellular protein (Ddx5) revealed by yeast and mammalian cell two-hybrid systems

1 reference

12 December 2020

Thinking Outside the Triangle: Replication Fidelity of the Largest RNA Viruses

1 reference

12 December 2020

Characterization of an essential RNA secondary structure in the 3' untranslated region of the murine coronavirus genome

1 reference

12 December 2020

Evolution of virus and defective-interfering RNAs in BHK cells persistently infected with Sindbis virus

1 reference

12 December 2020

An optimal cis-replication stem-loop IV in the 5' untranslated region of the mouse coronavirus genome extends 16 nucleotides into open reading frame 1.

1 reference

12 December 2020

Crystal structure and mechanistic determinants of SARS coronavirus nonstructural protein 15 define an endoribonuclease family

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12 December 2020

Nidovirus ribonucleases: Structures and functions in viral replication

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12 December 2020

Studies of coronavirus DI RNA replication using in vitro constructed DI cDNA clones

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12 December 2020

Heterogeneous nuclear ribonucleoprotein A1 regulates RNA synthesis of a cytoplasmic virus

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12 December 2020

Membrane topology of murine coronavirus replicase nonstructural protein 3.

1 reference

12 December 2020

Functional analysis of the stem loop S3 and S4 structures in the coronavirus 3'UTR.

1 reference

12 December 2020

Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia

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12 December 2020

Severe acute respiratory syndrome coronavirus nsp1 suppresses host gene expression, including that of type I interferon, in infected cells

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12 December 2020

Functional coupling between replication and packaging of poliovirus replicon RNA

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12 December 2020

A new model for coronavirus transcription

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12 December 2020

Requirement of the 5'-end genomic sequence as an upstream cis-acting element for coronavirus subgenomic mRNA transcription.

1 reference

12 December 2020

SARS-coronavirus replication is supported by a reticulovesicular network of modified endoplasmic reticulum

1 reference

12 December 2020

Primary structure and translation of a defective interfering RNA of murine coronavirus

1 reference

12 December 2020

Organelle-like membrane compartmentalization of positive-strand RNA virus replication factories

1 reference

12 December 2020

Defective interfering particles of mouse hepatitis virus

1 reference

12 December 2020

The 3' untranslated region of coronavirus RNA is required for subgenomic mRNA transcription from a defective interfering RNA.

1 reference

12 December 2020

Identification and characterization of a coronavirus packaging signal

1 reference

12 December 2020

Packaging of brome mosaic virus subgenomic RNA is functionally coupled to replication-dependent transcription and translation of coat protein

1 reference

12 December 2020

Insights into SARS-CoV transcription and replication from the structure of the nsp7-nsp8 hexadecamer

1 reference

12 December 2020

Dodecamer structure of severe acute respiratory syndrome coronavirus nonstructural protein nsp10.

1 reference

12 December 2020

Severe acute respiratory syndrome coronavirus protein nsp1 is a novel eukaryotic translation inhibitor that represses multiple steps of translation initiation

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12 December 2020

How retroviruses select their genomes

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12 December 2020

Coronavirus genome structure and replication

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12 December 2020

A subgenomic mRNA transcript of the coronavirus mouse hepatitis virus strain A59 defective interfering (DI) RNA is packaged when it contains the DI packaging signal

1 reference

12 December 2020

Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot

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12 December 2020

Identification of a novel coronavirus in patients with severe acute respiratory syndrome

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12 December 2020

A two-pronged strategy to suppress host protein synthesis by SARS coronavirus Nsp1 protein

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12 December 2020

Virus-encoded proteinases and proteolytic processing in the Nidovirales.

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12 December 2020

Structure of the intracellular defective viral RNAs of defective interfering particles of mouse hepatitis virus

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12 December 2020

Identification of a domain required for autoproteolytic cleavage of murine coronavirus gene A polyprotein

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12 December 2020

A domain at the 3' end of the polymerase gene is essential for encapsidation of coronavirus defective interfering RNAs.

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12 December 2020

Reverse genetics of SARS-related coronavirus using vaccinia virus-based recombination

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12 December 2020

The human coronavirus 229E superfamily 1 helicase has RNA and DNA duplex-unwinding activities with 5'-to-3' polarity

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12 December 2020

Bovine coronavirus nonstructural protein 1 (p28) is an RNA binding protein that binds terminal genomic cis-replication elements

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12 December 2020

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12 December 2020

Discovery of an RNA virus 3'->5' exoribonuclease that is critically involved in coronavirus RNA synthesis

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12 December 2020

Alphacoronavirus transmissible gastroenteritis virus nsp1 protein suppresses protein translation in mammalian cells and in cell-free HeLa cell extracts but not in rabbit reticulocyte lysate

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12 December 2020

The molecular biology of coronaviruses

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12 December 2020

Genetic interactions between an essential 3' cis-acting RNA pseudoknot, replicase gene products, and the extreme 3' end of the mouse coronavirus genome

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12 December 2020

Regulation of coronaviral poly(A) tail length during infection

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12 December 2020

Stem-loop III in the 5' untranslated region is a cis-acting element in bovine coronavirus defective interfering RNA replication

1 reference

12 December 2020

RNA replication of mouse hepatitis virus takes place at double-membrane vesicles

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12 December 2020

The nucleoprotein is required for efficient coronavirus genome replication.

1 reference

12 December 2020

Severe acute respiratory syndrome coronavirus nsp1 protein suppresses host gene expression by promoting host mRNA degradation

1 reference

12 December 2020

Attenuation of mouse hepatitis virus by deletion of the LLRKxGxKG region of Nsp1.

1 reference

12 December 2020

Molecular characterization of transmissible gastroenteritis coronavirus defective interfering genomes: packaging and heterogeneity.

1 reference

12 December 2020

A bulged stem-loop structure in the 3' untranslated region of the genome of the coronavirus mouse hepatitis virus is essential for replication

1 reference

12 December 2020

Transmissible gastroenteritis coronavirus genome packaging signal is located at the 5' end of the genome and promotes viral RNA incorporation into virions in a replication-independent process

1 reference

12 December 2020

Mouse hepatitis virus stem-loop 4 functions as a spacer element required to drive subgenomic RNA synthesis

1 reference

12 December 2020

Reverse genetics system for the avian coronavirus infectious bronchitis virus

1 reference

12 December 2020

Heterogeneous nuclear ribonucleoprotein a1 binds to the 3'-untranslated region and mediates potential 5'-3'-end cross talks of mouse hepatitis virus RNA.

1 reference

12 December 2020

Interactions between the cytoplasmic proteins and the intergenic (promoter) sequence of mouse hepatitis virus RNA: correlation with the amounts of subgenomic mRNA transcribed

1 reference

12 December 2020

The nucleocapsid protein of coronavirus mouse hepatitis virus interacts with the cellular heterogeneous nuclear ribonucleoprotein A1 in vitro and in vivo

1 reference

12 December 2020

Viral and cellular proteins involved in coronavirus replication.

1 reference

12 December 2020

Coronavirus main proteinase (3CLpro) structure: basis for design of anti-SARS drugs

1 reference

12 December 2020

Reverse genetics with a full-length infectious cDNA of severe acute respiratory syndrome coronavirus

1 reference

12 December 2020

Deletion mapping of Sindbis virus DI RNAs derived from cDNAs defines the sequences essential for replication and packaging

1 reference

12 December 2020

The autocatalytic release of a putative RNA virus transcription factor from its polyprotein precursor involves two paralogous papain-like proteases that cleave the same peptide bond.

1 reference

12 December 2020

Polypyrimidine tract-binding protein binds to the complementary strand of the mouse hepatitis virus 3' untranslated region, thereby altering RNA conformation.

1 reference

12 December 2020

Sequence analysis of the bovine coronavirus nucleocapsid and matrix protein genes

1 reference

12 December 2020

The 5' end of coronavirus minus-strand RNAs contains a short poly(U) tract

1 reference

12 December 2020

Genome organization and reverse genetic analysis of a type I feline coronavirus

1 reference

12 December 2020

Severe acute respiratory syndrome coronavirus nsp1 facilitates efficient propagation in cells through a specific translational shutoff of host mRNA.

1 reference

12 December 2020

SYNCRIP, a member of the heterogeneous nuclear ribonucleoprotein family, is involved in mouse hepatitis virus RNA synthesis

1 reference

12 December 2020

The UCUAAAC promoter motif is not required for high-frequency leader recombination in bovine coronavirus defective interfering RNA

1 reference

12 December 2020

Coronavirus non-structural protein 1 is a major pathogenicity factor: implications for the rational design of coronavirus vaccines

1 reference

12 December 2020

Reverse genetics with a full-length infectious cDNA of the Middle East respiratory syndrome coronavirus

1 reference

12 December 2020

Secondary structural elements within the 3' untranslated region of mouse hepatitis virus strain JHM genomic RNA

1 reference

12 December 2020

The fitness of defective interfering murine coronavirus DI-a and its derivatives is decreased by nonsense and frameshift mutations

1 reference

12 December 2020

Replication and packaging of coronavirus infectious bronchitis virus defective RNAs lacking a long open reading frame

1 reference

12 December 2020

Live, attenuated coronavirus vaccines through the directed deletion of group-specific genes provide protection against feline infectious peritonitis

1 reference

12 December 2020

Strategy for systematic assembly of large RNA and DNA genomes: transmissible gastroenteritis virus model

1 reference

12 December 2020

Minus-strand copies of replicating coronavirus mRNAs contain antileaders

1 reference

12 December 2020

A hypervariable region within the 3' cis-acting element of the murine coronavirus genome is nonessential for RNA synthesis but affects pathogenesis

1 reference

12 December 2020

Nidovirus transcription: how to make sense...?

1 reference

12 December 2020

Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain

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12 December 2020

Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering

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12 December 2020

Replication and packaging of transmissible gastroenteritis coronavirus-derived synthetic minigenomes

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12 December 2020

New structure model for the packaging signal in the genome of group IIa coronaviruses.

1 reference

12 December 2020

Leader switching occurs during the rescue of defective RNAs by heterologous strains of the coronavirus infectious bronchitis virus.

1 reference

12 December 2020

Functional screen reveals SARS coronavirus nonstructural protein nsp14 as a novel cap N7 methyltransferase

1 reference

12 December 2020

Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNA

1 reference

12 December 2020

SARS coronavirus nsp1 protein induces template-dependent endonucleolytic cleavage of mRNAs: viral mRNAs are resistant to nsp1-induced RNA cleavage

1 reference

12 December 2020

Coronavirus nonstructural protein 16 is a cap-0 binding enzyme possessing (nucleoside-2'O)-methyltransferase activity

1 reference

12 December 2020

Sequence analysis of the nucleocapsid protein gene of human coronavirus 229E.

1 reference

12 December 2020

Replication of synthetic defective interfering RNAs derived from coronavirus mouse hepatitis virus-A59.

1 reference

12 December 2020

The solution structure of coronaviral stem-loop 2 (SL2) reveals a canonical CUYG tetraloop fold

1 reference

12 December 2020

Polypyrimidine tract-binding protein binds to the leader RNA of mouse hepatitis virus and serves as a regulator of viral transcription

1 reference

12 December 2020

Crystal Structure and Functional Analysis of the SARS-Coronavirus RNA Cap 2′-O-Methyltransferase nsp10/nsp16 Complex

1 reference

12 December 2020

Coronaviruses lacking exoribonuclease activity are susceptible to lethal mutagenesis: evidence for proofreading and potential therapeutics

1 reference

12 December 2020

Coronaviruses maintain viability despite dramatic rearrangements of the strictly conserved genome organization

1 reference

12 December 2020

A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting.

1 reference

12 December 2020

An RNA stem-loop within the bovine coronavirus nsp1 coding region is a cis-acting element in defective interfering RNA replication

1 reference

12 December 2020

Characterization of a replicating and packaged defective RNA of avian coronavirus infectious bronchitis virus

1 reference

12 December 2020

Host cell proteins interacting with the 3' end of TGEV coronavirus genome influence virus replication.

1 reference

12 December 2020

Dependence of coronavirus RNA replication on an NH2-terminal partial nonstructural protein 1 in cis.

1 reference

12 December 2020

Coronavirus leader RNA regulates and initiates subgenomic mRNA transcription both in trans and in cis.

1 reference

12 December 2020

The 3' cis-acting genomic replication element of the severe acute respiratory syndrome coronavirus can function in the murine coronavirus genome

1 reference

12 December 2020

A contemporary view of coronavirus transcription.

1 reference

12 December 2020

Identification of a bovine coronavirus packaging signal

1 reference

12 December 2020

Ultrastructure and origin of membrane vesicles associated with the severe acute respiratory syndrome coronavirus replication complex

1 reference

12 December 2020

Group-specific structural features of the 5'-proximal sequences of coronavirus genomic RNAs

1 reference

12 December 2020

Biochemical and Structural Insights into the Mechanisms of SARS Coronavirus RNA Ribose 2′-O-Methylation by nsp16/nsp10 Protein Complex

1 reference

12 December 2020

Functional transcriptional regulatory sequence (TRS) RNA binding and helix destabilizing determinants of murine hepatitis virus (MHV) nucleocapsid (N) protein.

1 reference

12 December 2020

The leader RNA of coronavirus mouse hepatitis virus contains an enhancer-like element for subgenomic mRNA transcription

1 reference

12 December 2020

Heterogeneous nuclear ribonucleoprotein A1 binds to the transcription-regulatory region of mouse hepatitis virus RNA.

1 reference

12 December 2020

Identification of a specific interaction between the coronavirus mouse hepatitis virus A59 nucleocapsid protein and packaging signal

1 reference

12 December 2020

Coronavirus nucleocapsid protein facilitates template switching and is required for efficient transcription

1 reference

12 December 2020

A cis-acting function for the coronavirus leader in defective interfering RNA replication.

1 reference

12 December 2020

Host protein interactions with the 3' end of bovine coronavirus RNA and the requirement of the poly(A) tail for coronavirus defective genome replication

1 reference

12 December 2020

Severe acute respiratory syndrome coronavirus evades antiviral signaling: role of nsp1 and rational design of an attenuated strain

1 reference

12 December 2020

Multiple type A/B heterogeneous nuclear ribonucleoproteins (hnRNPs) can replace hnRNP A1 in mouse hepatitis virus RNA synthesis

1 reference

12 December 2020

SARS-coronavirus replication/transcription complexes are membrane-protected and need a host factor for activity in vitro

1 reference

12 December 2020

Bovine coronavirus mRNA replication continues throughout persistent infection in cell culture.

1 reference

12 December 2020

One severe acute respiratory syndrome coronavirus protein complex integrates processive RNA polymerase and exonuclease activities

1 reference

12 December 2020

Completion of the sequence of the genome of the coronavirus avian infectious bronchitis virus

1 reference

12 December 2020

Middle East respiratory syndrome.

1 reference

12 December 2020

Reselection of a genomic upstream open reading frame in mouse hepatitis coronavirus 5'-untranslated-region mutants

1 reference

12 December 2020

Coronavirus N Protein N-Terminal Domain (NTD) Specifically Binds the Transcriptional Regulatory Sequence (TRS) and Melts TRS-cTRS RNA Duplexes

1 reference

12 December 2020

Discovery of the first insect nidovirus, a missing evolutionary link in the emergence of the largest RNA virus genomes

1 reference

12 December 2020

Coronaviruses: an overview of their replication and pathogenesis.

1 reference

12 December 2020

Discontinuous subgenomic RNA synthesis in arteriviruses is guided by an RNA hairpin structure located in the genomic leader region

1 reference

12 December 2020

Topology and Membrane Anchoring of the Coronavirus Replication Complex: Not All Hydrophobic Domains of nsp3 and nsp6 Are Membrane Spanning

1 reference

12 December 2020

Effect of mutations in the mouse hepatitis virus 3'(+)42 protein binding element on RNA replication

1 reference

12 December 2020

Structural basis and functional analysis of the SARS coronavirus nsp14-nsp10 complex

1 reference

12 December 2020

Analysis of intraviral protein-protein interactions of the SARS coronavirus ORFeome

1 reference

12 December 2020

Deletion mapping of a mouse hepatitis virus defective interfering RNA reveals the requirement of an internal and discontiguous sequence for replication.

1 reference

12 December 2020

LocARNA-P: accurate boundary prediction and improved detection of structural RNAs

1 reference

12 December 2020

Localization and Membrane Topology of Coronavirus Nonstructural Protein 4: Involvement of the Early Secretory Pathway in Replication

1 reference

12 December 2020

Analysis of efficiently packaged defective interfering RNAs of murine coronavirus: localization of a possible RNA-packaging signal

1 reference

12 December 2020

Nidovirus papain-like proteases: multifunctional enzymes with protease, deubiquitinating and deISGylating activities

1 reference

12 December 2020

Regulation of coronaviral poly(A) tail length during infection is not coronavirus species- or host cell-specific

1 reference

12 December 2020

Presence of leader sequences in the mRNA of mouse hepatitis virus

1 reference

12 December 2020

Sequences of the nucleocapsid genes from two strains of avian infectious bronchitis virus

1 reference

12 December 2020

A U-turn motif-containing stem-loop in the coronavirus 5' untranslated region plays a functional role in replication

1 reference

12 December 2020

Coronavirus nucleocapsid protein is an RNA chaperone.

1 reference

12 December 2020

SHAPE analysis of the RNA secondary structure of the Mouse Hepatitis Virus 5' untranslated region and N-terminal nsp1 coding sequences

1 reference

12 December 2020

Recombination and Coronavirus Defective Interfering RNAs

1 reference

12 December 2020